Basic vesicle is dumped and restored, however, memory is not ok.

Samo Penic

2016-02-26 a3dbf0899f9a077c025136336b597ae9b22e414f

 src/restore.c

@@ -10,6 +10,9 @@
#include "vesicle.h"
#include "vertex.h"
#include "triangle.h"
#include "bond.h"
#include "energy.h"
#include "initial_distribution.h"

ts_bool parseDump(char *dumpfname) {
   xmlDocPtr doc;
@@ -51,6 +54,8 @@
                  }
                  if ((!xmlStrcmp(cur2->name, (const xmlChar *)"Cells"))){
                  fprintf(stderr,"Found cell(Bonds) data\n");
                     if(vesicle!=NULL)
                        parseXMLBonds(vesicle, doc, cur);
                  }
                  cur2=cur2->next;
               }   
@@ -63,6 +68,11 @@
   }
   
   xmlFreeDoc(doc);
   init_normal_vectors(vesicle->tlist);
   mean_curvature_and_energy(vesicle);

/* TODO: cells, polymeres, filaments, core, tape */

   fprintf(stderr,"Restoration completed\n");
   exit(0);
   vesicle_free(vesicle);
@@ -245,5 +255,29 @@
   }
   return TS_SUCCESS;
}
ts_bool parseXMLBonds(ts_vesicle *vesicle,xmlDocPtr doc, xmlNodePtr cur){
   xmlNodePtr child = cur->xmlChildrenNode;
   xmlChar *bonds;
   char *b;
   int i, idx;
   char *token[2];
   while (child != NULL) {
      if ((!xmlStrcmp(child->name, (const xmlChar *)"DataArray"))){
         bonds = xmlNodeListGetString(doc, child->xmlChildrenNode, 1);
         b=(char *)bonds;
         for(i=0;i<2;i++)   token[i]=strtok(b," ");
         idx=0;
         while(token[0]!=NULL){
            bond_add(vesicle->blist, vesicle->vlist->vtx[atoi(token[0])], vesicle->vlist->vtx[atoi(token[1])]);
            for(i=0;i<2;i++)   token[i]=strtok(NULL," ");	
            idx++;
         }
         xmlFree(bonds);
      }
      child=child->next;
   }
   return TS_SUCCESS;
}