| | |
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| | | |
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| | | ####### Polymer (brush) definitions ########### |
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| | | # npoly is a number of polymers attached to npoly distinct vertices on vesicle |
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| | | npoly=3 |
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| | | npoly=0 |
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| | | # nmono is a number of monomers in each polymer |
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| | | nmono=10 |
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| | | nmono=2 |
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| | | # Spring constant between monomers of the polymer |
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| | | k_spring=800 |
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| | | |
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| | | ####### Filament (inside the vesicle) definitions ########### |
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| | | # nfil is a number of filaments inside the vesicle |
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| | | nfil=2 |
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| | | nfil=0 |
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| | | # nfono is a number of monomers in each filament |
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| | | nfono=300 |
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| | | nfono=3 |
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| | | # Persistence lenght of the filaments (in units l_min) |
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| | | xi=100 |
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| | | |
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| | | ####### Nucleus (inside the vesicle) ########### |
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| | | # Radius of an impenetrable hard sphere inside the vesicle |
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| | | R_nucleus=0 |
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| | | R_nucleusX=6.0 |
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| | | R_nucleusY=12.0 |
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| | | R_nucleusZ=6.0 |
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| | | R_nucleusX=0 |
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| | | R_nucleusY=0 |
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| | | R_nucleusZ=0 |
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| | | ####### Cell definitions ############ |
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| | | nxmax=60 |
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| | | nymax=60 |
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| | |
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| | | ####### Program Control ############ |
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| | | #how many MC sweeps between subsequent records of states to disk |
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| | | #200000 |
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| | | mcsweeps=200 |
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| | | mcsweeps=2000 |
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| | | #how many initial mcsweeps*inititer MC sweeps before recording to disk? |
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| | | #2 |
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| | | inititer=0 |
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| | |
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| | | |
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| | | #NirGov branch only! |
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| | | #number of vertices with spontaneous curvature (integer) |
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| | | number_of_vertices_with_c0=1447 |
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| | | number_of_vertices_with_c0=300 |
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| | | #spontaneous curvature (float) |
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| | | c0=2.0 |
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| | | #energy of attraction of vertices with spontaneous curvature |
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| | | w=1.0 |
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| | | c0=0.5 |
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| | | #energy of attraction of vertices with spontaneous curvature (float, positive value for attraction) |
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| | | w=10.0 |
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| | | |
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