Tried to made all functionality for clustering. Not debugged and will proba...

Samo Penic

2016-07-03 759169c7cead24a05533f78058c5a7ebdda319c5

 src/main.c

@@ -30,6 +30,9 @@
   ts_tape *tape;
   ts_uint start_iteration=0;
   force_from_tape=0;
   /* Area and volume for constant area and constant volume are initialized to be zero */
   A0=0;
   V0=0;
   /* create lock file */
   createPidFile("ts_trisurf",".lock",0);
   parse_args(argv,argc); // sets global variable command_line_args (defined in io.h)
@@ -46,12 +49,18 @@
      ts_fprintf(stdout,"************************************************\n\n");
      vesicle = parseDump(command_line_args.dump_from_vtk);
      tape = vesicle->tape;
      int arguments_no;
      FILE *fd=fopen(".status","r");
      if(fd!=NULL){
         fscanf(fd,"%u", &start_iteration);
         arguments_no=fscanf(fd,"%u", &start_iteration);
         if(arguments_no==0){
            ts_fprintf(stdout,"No information of start iteration in .status file");
            }
         fclose(fd);
         start_iteration++;
      }
      else
         ts_fprintf(stdout,"No .status file. The iteration count will start from 0");
/* Here you should read new tape file, reassign some values in vertex from the tape and assign read tape to vesicle->tape */
//        tape=parsetape(command_line_args.tape_fullfilename);
  //      vesicle=vtk2vesicle(command_line_args.dump_from_vtk,tape);
@@ -116,6 +125,7 @@
      }
      }
   }
         //printf("nucleus coords: %.17e %.17e %.17e\n",vesicle->nucleus_center[0], vesicle->nucleus_center[1], vesicle->nucleus_center[2]);

   run_simulation(vesicle, tape->mcsweeps, tape->inititer, tape->iterations, start_iteration);
   write_master_xml_file(command_line_args.output_fullfilename);