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| | | #include "shcomplex.h" |
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| | | #include "dumpstate.h" |
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| | | #include "restore.h" |
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| | | |
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| | | #include "plugins.h" |
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| | | #include <fcntl.h> |
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| | | /** Entrance function to the program |
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| | | * @param argv is a number of parameters used in program call (including the program name |
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| | | * @param argc is a pointer to strings (character arrays) which holds the arguments |
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| | | * @returns returns 0 on success, any other number on fail. |
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| | | */ |
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| | | |
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| | | #include <string.h> |
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| | | int main(int argv, char *argc[]){ |
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| | | ts_char *plugin0 = (ts_char *)calloc(255,sizeof(ts_char)); |
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| | | ts_char *plugin1 = (ts_char *)calloc(255,sizeof(ts_char)); |
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| | | ts_char *plugin2 = (ts_char *)calloc(255,sizeof(ts_char)); |
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| | | ts_char *plugin3 = (ts_char *)calloc(255,sizeof(ts_char)); |
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| | | ts_char *plugin4 = (ts_char *)calloc(255,sizeof(ts_char)); |
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| | | ts_char *plugin5 = (ts_char *)calloc(255,sizeof(ts_char)); |
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| | | ts_char *plugin6 = (ts_char *)calloc(255,sizeof(ts_char)); |
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| | | ts_char *plugin7 = (ts_char *)calloc(255,sizeof(ts_char)); |
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| | | strcpy(plugin0,"/home/samo/programiranje/trisurf-ng/src/plugins/.libs/demoplugin.so"); |
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| | | strcpy(plugin1,"/home/samo/programiranje/trisurf-ng/src/plugins/.libs/vmdefaulthardconstraints.so"); |
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| | | strcpy(plugin2,"/home/samo/programiranje/trisurf-ng/src/plugins/.libs/plane_confinement.so"); |
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| | | strcpy(plugin3,"/home/samo/programiranje/trisurf-ng/src/plugins/.libs/pressure.so"); |
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| | | strcpy(plugin4,"/home/samo/programiranje/trisurf-ng/src/plugins/.libs/constant_volume.so"); |
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| | | strcpy(plugin5,"/home/samo/programiranje/trisurf-ng/src/plugins/.libs/constant_area.so"); |
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| | | strcpy(plugin6,"/home/samo/programiranje/trisurf-ng/src/plugins/.libs/stretching_energy.so"); |
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| | | strcpy(plugin7,"/home/samo/programiranje/trisurf-ng/src/plugins/.libs/direct_force_on_c0.so"); |
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| | | ts_char **plugins=(ts_char **)calloc(8,sizeof(ts_char *)); |
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| | | plugins[0]=plugin0; |
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| | | plugins[1]=plugin1; |
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| | | plugins[2]=plugin2; |
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| | | plugins[3]=plugin3; |
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| | | plugins[4]=plugin4; |
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| | | plugins[5]=plugin5; |
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| | | plugins[6]=plugin6; |
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| | | plugins[7]=plugin7; |
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| | | ts_plugin_list *plist=init_plugin_list(plugins,8); |
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| | | //printf("%s", plist->chain->at_start->next->plugin->filename); |
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| | | //ts_fprintf(stdout, "TRISURF in PRVI PLUGIN %s\n", plist->plugin[0]->details->name); |
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| | | ts_vesicle *vesicle; |
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| | | ts_tape *tape; |
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| | | ts_uint start_iteration=0; |
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| | | ts_fprintf(stdout,"Programming done by: Samo Penic and Miha Fosnaric\n"); |
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| | | ts_fprintf(stdout,"Released under terms of GPLv3\n"); |
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| | | ts_fprintf(stdout,"Starting program...\n\n"); |
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| | | // vesicle = parseDump("timestep_000000.vtu"); |
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| | | // run_simulation(vesicle, vesicle->tape->mcsweeps, vesicle->tape->inititer, vesicle->tape->iterations, 1); |
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| | | |
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| | | /* Entry point for plugin function at_start() */ |
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| | | ts_plugin_chain *ptr=plist->chain->at_start; |
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| | | while(ptr!=NULL){ |
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| | | ptr->plugin->function->at_start(argv,argc); |
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| | | ptr=ptr->next; |
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| | | } |
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| | | |
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| | | if(command_line_args.dump_from_vtk[0]!=0){ |
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| | | ts_fprintf(stdout,"************************************************\n"); |
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| | |
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| | | if(fd!=NULL){ |
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| | | arguments_no=fscanf(fd,"%u", &start_iteration); |
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| | | if(arguments_no==0){ |
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| | | ts_fprintf(stdout,"No information of start iteration in .status file"); |
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| | | ts_fprintf(stdout,"No information of start iteration in .status file\n"); |
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| | | } |
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| | | fclose(fd); |
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| | | start_iteration++; |
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| | | write_vertex_xml_file(vesicle,1000); |
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| | | start_iteration++; |
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| | | } |
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| | | else |
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| | | ts_fprintf(stdout,"No .status file. The iteration count will start from 0"); |
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| | | /* Here you should read new tape file, reassign some values in vertex from the tape and assign read tape to vesicle->tape */ |
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| | | // tape=parsetape(command_line_args.tape_fullfilename); |
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| | | // vesicle=vtk2vesicle(command_line_args.dump_from_vtk,tape); |
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| | | ts_fprintf(stdout,"No .status file. The iteration count will start from 0\n"); |
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| | | } |
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| | | else if(command_line_args.force_from_tape){ |
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| | | ts_fprintf(stdout,"************************************************\n"); |
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| | |
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| | | } |
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| | | } |
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| | | } |
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| | | //printf("nucleus coords: %.17e %.17e %.17e\n",vesicle->nucleus_center[0], vesicle->nucleus_center[1], vesicle->nucleus_center[2]); |
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| | | |
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| | | vesicle->plist=plist; |
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| | | /* Entry point for plugin after_vesicle_init() function */ |
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| | | vesicle->plist->pointer=vesicle->plist->chain->after_vesicle_init; |
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| | | while(vesicle->plist->pointer!=NULL){ |
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| | | vesicle=vesicle->plist->pointer->plugin->function->after_vesicle_init(vesicle); |
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| | | vesicle->plist->pointer=vesicle->plist->pointer->next; |
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| | | } |
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| | | |
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| | | run_simulation(vesicle, tape->mcsweeps, tape->inititer, tape->iterations, start_iteration); |
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| | | write_master_xml_file(command_line_args.output_fullfilename); |
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| | | write_dout_fcompat_file(vesicle,"dout"); |
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| | | /* Entry point for plugin cleanup() function */ |
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| | | ptr=plist->chain->cleanup; |
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| | | while(ptr!=NULL){ |
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| | | ptr->plugin->function->cleanup(); |
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| | | ptr=ptr->next; |
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| | | } |
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| | | |
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| | | vesicle_free(vesicle); |
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| | | tape_free(tape); |
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| | | return 0; //program finished perfectly ok. We return 0. |
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