trisurf-ng.git - Gitblit

			@@ -19,6 +19,7 @@
			TS_NONEXISTANT=0 # process is not in the list of processes
			TS_STOPPED=1 # the process is listed, but is in stopped state
			TS_RUNNING=2 # process is running
			TS_COMPLETED=3 #simulation is completed

			class FileContent:
			'''
			@@ -142,7 +143,9 @@
			'''Method makeifnotexist() creates directory if it does not exist.'''
			if(self.exists()==0):
			self.make()
			return
			return True
			else:
			return False

			def remove(self):
			'''Method remove() removes directory recursively. WARNING! No questions asked.'''
			@@ -207,7 +210,13 @@
			Method read() reads the statistics if it exists. It sets local variable dT storing the time differential between two intervals of simulation (outer loops). It also stores last simulation loop and the start of the run.
			'''
			if(self.exists()):
			# epoch1=0
			# epoch2=0
			# n1=0
			# n2=0
			nlines=self.mapcount()
			if nlines<2:
			return(False)
			try:
			with open(self.fullname, "r+") as fin:
			i=0;
			@@ -228,8 +237,10 @@
			else:
			#print("File "+self.fullname+" does not exists.\n")
			return(False)

			self.dT=(int(epoch2)-int(epoch1))/(int(n2)-int(n1))
			try:
			self.dT=(int(epoch2)-int(epoch1))/(int(n2)-int(n1))
			except:
			self.dT=0
			self.last=n2
			self.startDate=epoch1
			return(True)
			@@ -246,13 +257,13 @@
			'''
			Class Runner consists of a single running or terminated instance of the trisurf. It manages starting, stopping, verifying the running process and printing the reports of the configured instances.
			'''
			def __init__(self, subdir='run0', tape='', snapshot='', runArgs=[]):
			def __init__(self, subdir='run0', tape=None, snapshot=None, runArgs=[]):
			self.subdir=subdir
			self.runArgs=runArgs
			self.fromSnapshot=False
			if(tape!=''):
			if(tape!=None):
			self.initFromTape(tape)
			if(snapshot!=''):
			if(snapshot!=None):
			self.initFromSnapshot(snapshot)
			return

			@@ -260,6 +271,7 @@
			def initFromTape(self, tape):
			self.tape=Tape()
			self.tape.readTape(tape)
			self.tapeFile=tape

			def initFromSnapshot(self, snapshotfile):
			try:
			@@ -274,10 +286,10 @@
			version=root.find('trisurfversion')
			self.tape=Tape()
			self.tape.setTape(tapetxt.text)


			def getPID(self):
			self.Dir=Directory(maindir=self.maindir,simdir=self.subdir)
			self.Dir.makeifnotexist()
			#self.Dir.makeifnotexist()
			try:
			fp = open(os.path.join(self.Dir.fullpath(),'.lock'))
			except IOError as e:
			@@ -286,14 +298,33 @@
			fp.close()
			return int(pid)

			def getLastIteration(self):
			self.Dir=Directory(maindir=self.maindir,simdir=self.subdir)
			#self.Dir.makeifnotexist()
			try:
			fp = open(os.path.join(self.Dir.fullpath(),'.status'))
			except IOError as e:
			return -1 #file probably does not exist. e==2??
			status=fp.readline()
			fp.close()
			return int(status)

			def isCompleted(self):
			if (int(self.tape.getValue("iterations"))==self.getLastIteration()+1):
			return True
			else:
			return False

			def getStatus(self):
			pid=self.getPID()
			if(self.isCompleted()):
			return TS_COMPLETED
			if(pid==0):
			return TS_NOLOCK
			if(psutil.pid_exists(int(pid))):
			proc= psutil.Process(int(pid))
			if proc.name=="trisurf":
			if proc.status=="stopped":
			if proc.name()=="trisurf":
			if proc.status()=="stopped":
			return TS_STOPPED
			else:
			return TS_RUNNING
			@@ -303,15 +334,43 @@
			return TS_NONEXISTANT

			def start(self):
			if(self.getStatus()==0):
			if(self.getStatus()==0 or self.getStatus()==TS_COMPLETED):
			self.Dir=Directory(maindir=self.maindir,simdir=self.subdir)
			self.Dir.makeifnotexist()
			#Symlinks tape file to the directory or create tape file from snapshot in the direcory...
			if(self.Dir.makeifnotexist()):
			if(self.fromSnapshot==False):
			try:
			os.symlink(os.path.abspath(self.tapeFile), self.Dir.fullpath()+"/tape")
			except:
			print("Error while symlinking "+os.path.abspath(self.tapeFile)+" to "+self.Dir.fullpath()+"/tape")
			exit(1)
			else:
			try:
			with open (os.path.join(self.Dir.fullpath(),"tape"), "w") as myfile:
			myfile.write("#This is automatically generated tape file from snapshot\n")
			myfile.write(str(self.tape))
			except:
			print("Error -- cannot make tapefile "+ os.path.join(self.Dir.fullpath(),"tape")+" from the snapshot in the running directory")
			exit(1)
			try:
			os.symlink(os.path.abspath(self.snapshotFile), os.path.join(self.Dir.fullpath(),self.snapshotFile))
			except:
			print("Error while symlinking "+os.path.abspath(self.snapshotFile)+" to "+os.path.join(self.Dir.fullpath(),self.snapshotFile))

			#check if the simulation has been completed. in this case notify user and stop executing.
			if(self.isCompleted() and ("--force-from-tape" not in self.runArgs) and ("--reset-iteration-count" not in self.runArgs)):
			print("The simulation was completed. Not starting executable at localhost in "+self.Dir.fullpath()+"\n")
			return

			cwd=Directory(maindir=os.getcwd())
			self.Dir.goto()
			print("Starting trisurf-ng executable at "+self.Dir.fullpath()+"\n")
			print("Starting trisurf-ng executable at localhost in "+self.Dir.fullpath()+"\n")
			if(self.fromSnapshot==True):
			params=["trisurf", "--restore-from-vtk",self.snapshotFile]+self.runArgs
			else:
			#veify if dump exists. If not it is a first run and shoud be run with --force-from-tape
			if(os.path.isfile("dump.bin")==False):
			self.runArgs.append("--force-from-tape")
			params=["trisurf"]+self.runArgs
			subprocess.Popen (params, stdout=subprocess.DEVNULL)
			cwd.goto()
			@@ -348,6 +407,8 @@
			pid=""
			elif status==TS_STOPPED:
			statustxt="Stopped"
			elif status==TS_COMPLETED:
			statustxt="Completed"
			else:
			statustxt="Running"