Trisurf Monte Carlo simulator
Samo Penic
2019-02-27 51b4f09bca802c4941700c78c5733ce968ddc7c6
src/main.c
@@ -27,10 +27,13 @@
#include <string.h>
int main(int argv, char *argc[]){
   ts_char *plugin0 = (ts_char *)calloc(255,sizeof(ts_char));
   ts_char *plugin1 = (ts_char *)calloc(255,sizeof(ts_char));
   strcpy(plugin0,"/home/samo/programiranje/trisurf-ng/src/plugins/.libs/demoplugin.so");
   ts_char **plugins=(ts_char **)calloc(1,sizeof(ts_char *));
   strcpy(plugin1,"/home/samo/programiranje/trisurf-ng/src/plugins/.libs/vmdefaulthardconstraints.so");
   ts_char **plugins=(ts_char **)calloc(2,sizeof(ts_char *));
   *plugins=plugin0;
   ts_plugin_list *plist=init_plugin_list(plugins,1);
   plugins[1]=plugin1;
   ts_plugin_list *plist=init_plugin_list(plugins,2);
   ts_fprintf(stdout, "TRISURF in PRVI PLUGIN %s\n", plist->plugin[0]->details->name);
   ts_vesicle *vesicle;
   ts_tape *tape;
@@ -46,15 +49,18 @@
   ts_fprintf(stdout,"Programming done by: Samo Penic and Miha Fosnaric\n");
   ts_fprintf(stdout,"Released under terms of GPLv3\n");
   ts_fprintf(stdout,"Starting program...\n\n");
//   vesicle = parseDump("timestep_000000.vtu");
//      run_simulation(vesicle, vesicle->tape->mcsweeps, vesicle->tape->inititer, vesicle->tape->iterations, 1);
/* Entry point for plugin function at_start() */
   int i;
   for(i=0; i<plist->n; i++){
      plist->plugin[i]->function->at_start(argv, argc);
   }
    if(command_line_args.dump_from_vtk[0]!=0){
      ts_fprintf(stdout,"************************************************\n");
      ts_fprintf(stdout,"**** Restoring vesicle from VTK points list ****\n");
      ts_fprintf(stdout,"************************************************\n\n");
      vesicle = parseDump(command_line_args.dump_from_vtk);
//      write_vertex_xml_file(vesicle,9999); // here you can test if restoration and rewritting results in the same dump file. Only the date od creation of dump file must differ.
      tape = vesicle->tape;
      int arguments_no;
      FILE *fd=fopen(".status","r");
@@ -68,9 +74,6 @@
      }
      else
         ts_fprintf(stdout,"No .status file. The iteration count will start from 0\n");
/* Here you should read new tape file, reassign some values in vertex from the tape and assign read tape to vesicle->tape */
//        tape=parsetape(command_line_args.tape_fullfilename);
  //      vesicle=vtk2vesicle(command_line_args.dump_from_vtk,tape);
    }
   else if(command_line_args.force_from_tape){
      ts_fprintf(stdout,"************************************************\n");
@@ -132,11 +135,13 @@
      }
      }
   }
         //printf("nucleus coords: %.17e %.17e %.17e\n",vesicle->nucleus_center[0], vesicle->nucleus_center[1], vesicle->nucleus_center[2]);
//   write_vertex_xml_file(vesicle,0);
//   exit(1);
         //write_vertex_xml_file(vesicle,1000);
   vesicle->plist=plist;
/* Entry point for plugin after_vesicle_init() function */
   for(i=0; i<plist->n; i++){
      vesicle = plist->plugin[i]->function->after_vesicle_init(vesicle);
   }
   run_simulation(vesicle, tape->mcsweeps, tape->inititer, tape->iterations, start_iteration);
   write_master_xml_file(command_line_args.output_fullfilename);
   write_dout_fcompat_file(vesicle,"dout");