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| | | #include<stdio.h> |
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| | | #include<math.h> |
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| | | #include<stdlib.h> |
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| | | #include "general.h" |
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| | | #include "vertex.h" |
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| | | #include "bond.h" |
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| | | #include "triangle.h" |
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| | | #include "cell.h" |
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| | | #include "vesicle.h" |
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| | | //#include "io.h" |
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| | | #include "io.h" |
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| | | #include "initial_distribution.h" |
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| | | #include "frame.h" |
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| | | #include "timestep.h" |
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| | | #include "poly.h" |
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| | | #include "sh.h" |
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| | | #include "shcomplex.h" |
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| | | |
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| | | /** Entrance function to the program |
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| | | * @param argv is a number of parameters used in program call (including the program name |
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| | | */ |
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| | | |
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| | | int main(int argv, char *argc[]){ |
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| | | ts_bool retval; |
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| | | ts_vertex_list *vlist=init_vertex_list(5); |
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| | | ts_bond_list *blist=init_bond_list(); |
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| | | ts_triangle_list *tlist=init_triangle_list(); |
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| | | ts_cell_list *clist=init_cell_list(3,3,3,0.3); |
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| | | ts_vesicle *vesicle; |
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| | | ts_vesicle *vesicle; |
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| | | ts_tape *tape; |
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| | | ts_uint start_iteration=0; |
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| | | force_from_tape=0; |
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| | | parse_args(argv,argc); // sets global variable command_line_args (defined in io.h) |
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| | | ts_fprintf(stdout,"Starting program...\n\n"); |
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| | | if(command_line_args.force_from_tape){ |
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| | | ts_fprintf(stdout,"************************************************\n"); |
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| | | ts_fprintf(stdout,"**** Generating initial geometry from tape *****\n"); |
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| | | ts_fprintf(stdout,"************************************************\n\n"); |
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| | | tape=parsetape("tape"); |
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| | | vesicle=create_vesicle_from_tape(tape); |
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| | | } else { |
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| | | |
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| | | retval=vtx_add_cneighbour(blist,vlist->vtx[1],vlist->vtx[0]); |
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| | | if(retval==TS_FAIL) printf("1. already a member or vertex is null!\n"); |
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| | | |
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| | | retval=vtx_add_cneighbour(blist,vlist->vtx[0],vlist->vtx[1]); |
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| | | if(retval==TS_FAIL) printf("2. already a member or vertex is null!\n"); |
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| | | |
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| | | retval=vtx_remove_neighbour(vlist->vtx[0],vlist->vtx[1]); |
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| | | vtx_add_neighbour(vlist->vtx[0],vlist->vtx[1]); |
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| | | |
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| | | vlist->vtx[0]->data->x=1.0; |
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| | | vlist->vtx[0]->data->x=1.1; |
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| | | |
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| | | bond_add(blist, vlist->vtx[1],vlist->vtx[0]); |
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| | | triangle_add(tlist,vlist->vtx[1],vlist->vtx[2],vlist->vtx[3]); |
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| | | |
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| | | triangle_add(tlist,vlist->vtx[1],vlist->vtx[2],vlist->vtx[3]); |
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| | | |
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| | | printf("Cell idx=1 has vertices=%u\n",clist->cell[0]->data->nvertex); |
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| | | cell_add_vertex(clist->cell[0], vlist->vtx[0]); |
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| | | printf("Cell idx=1 has vertices=%u\n",clist->cell[0]->data->nvertex); |
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| | | printf("Cell idx=1 has vertex[0] has x coordinate=%e\n",clist->cell[0]->data->vertex[0]->data->x); |
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| | | cell_list_cell_occupation_clear(clist); |
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| | | printf("Cell idx=1 has vertices=%u\n",clist->cell[0]->data->nvertex); |
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| | | cell_add_vertex(clist->cell[0], vlist->vtx[0]); |
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| | | ts_fprintf(stdout,"**********************************************************************\n"); |
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| | | ts_fprintf(stdout,"**** Recreating vesicle from dump file and continuing simulation *****\n"); |
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| | | ts_fprintf(stdout,"**********************************************************************\n\n"); |
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| | | tape=parsetape("tape"); |
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| | | vesicle=restore_state(&start_iteration); |
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| | | if(vesicle==NULL){ |
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| | | ts_fprintf(stderr, "Dump file does not exist or is not a regular file! Did you mean to invoke trisurf with --force-from-tape option?\n\n"); |
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| | | return 1; |
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| | | } |
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| | | // nove vrednosti iz tapea... |
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| | | vesicle->bending_rigidity=tape->xk0; |
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| | | vtx_set_global_values(vesicle); |
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| | | vesicle->pswitch =tape->pswitch; |
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| | | vesicle->pressure=tape->pressure; |
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| | | vesicle->dmax=tape->dmax*tape->dmax; |
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| | | poly_assign_filament_xi(vesicle,tape); |
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| | | free(vesicle->tape); |
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| | | vesicle->tape=tape; |
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| | | vesicle->clist->dmin_interspecies = tape->dmin_interspecies*tape->dmin_interspecies; |
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| | | |
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| | | |
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| | | triangle_list_free(tlist); |
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| | | bond_list_free(blist); |
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| | | vtx_list_free(vlist); |
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| | | cell_list_free(clist); |
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| | | printf("Tests complete.\n"); |
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| | | |
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| | | vesicle=initial_distribution_dipyramid(7,10,10,10,0.3); |
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| | | /* spherical harmonics */ |
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| | | if(tape->shc>0){ |
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| | | vesicle->sphHarmonics=complex_sph_init(vesicle->vlist,tape->shc); |
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| | | } |
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| | | else { |
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| | | vesicle->sphHarmonics=NULL; |
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| | | } |
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| | | |
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| | | vesicle_free(vesicle); |
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| | | if(command_line_args.reset_iteration_count) start_iteration=tape->inititer; |
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| | | else start_iteration++; |
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| | | |
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| | | return 0; //program finished perfectly ok. We return 0. |
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| | | if(start_iteration>=tape->iterations){ |
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| | | ts_fprintf(stdout, "Simulation already completed. if you want to rerun it try with --force-from-tape or --reset-iteration-count\n\n"); |
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| | | return 0; |
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| | | } |
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| | | } |
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| | | |
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| | | run_simulation(vesicle, tape->mcsweeps, tape->inititer, tape->iterations, start_iteration); |
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| | | write_master_xml_file("test.pvd"); |
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| | | write_dout_fcompat_file(vesicle,"dout"); |
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| | | vesicle_free(vesicle); |
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| | | tape_free(tape); |
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| | | return 0; //program finished perfectly ok. We return 0. |
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| | | } |
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