Trisurf Monte Carlo simulator
Samo Penic
2016-05-20 37791bf67add4094040a9b8706450695805bf88f
python/trisurf/trisurf.py
@@ -199,13 +199,18 @@
      Internal method for determining the number of the lines in the most efficient way. Is it really the most efficient?
      '''
      f = open(self.fullname, "r+")
      buf = mmap.mmap(f.fileno(), 0)
      lines = 0
      readline = buf.readline
      while readline():
         lines += 1
      try:
         buf = mmap.mmap(f.fileno(), 0)
         lines = 0
         readline = buf.readline
         while readline():
            lines += 1
         f.close()
      except:
         lines=0
         f.close()
      return lines
   def read(self):
      '''
      Method read() reads the statistics if it exists. It sets local variable dT storing the time differential between two intervals of simulation (outer loops). It also stores last simulation loop and the start of the run.
@@ -287,7 +292,7 @@
      version=root.find('trisurfversion')
      self.tape=Tape()
      self.tape.setTape(tapetxt.text)
   def getPID(self):
      self.Dir=Directory(maindir=self.maindir,simdir=self.subdir)
      #self.Dir.makeifnotexist()
@@ -324,8 +329,15 @@
         return TS_NOLOCK
      if(psutil.pid_exists(int(pid))):
         proc= psutil.Process(int(pid))
         if proc.name=="trisurf":
            if proc.status=="stopped":
         #psutil.__version__ == '3.4.2' requires name() and status(), some older versions reguire name, status
         if(psutil.__version__>='2.0.0'):
            procname=proc.name()
            procstat=proc.status()
         else:
            procname=proc.name
            procstat=proc.status
         if procname=="trisurf":
            if procstat=="stopped":
               return TS_STOPPED
            else:
               return TS_RUNNING
@@ -358,7 +370,7 @@
                  print("Error -- cannot make tapefile  "+ os.path.join(self.Dir.fullpath(),"tape")+" from the snapshot in the running directory")
                  exit(1)
               try:
                  os.symlink(os.path.abspath(self.snapshotFile), os.path.join(self.Dir.fullpath(),self.snapshotFile))
                  os.symlink(os.path.abspath(self.snapshotFile), os.path.join(self.Dir.fullpath(),"initial_snapshot.vtu"))
               except:
                  print("Error while symlinking "+os.path.abspath(self.snapshotFile)+" to "+os.path.join(self.Dir.fullpath(),self.snapshotFile))
      
@@ -371,7 +383,7 @@
         self.Dir.goto()
         print("Starting trisurf-ng executable in "+self.Dir.fullpath())
         if(self.fromSnapshot==True):
            params=["trisurf", "--restore-from-vtk",self.snapshotFile]+self.runArgs
            params=["trisurf", "--restore-from-vtk","initial_snapshot.vtu"]+self.runArgs
         else:
            #veify if dump exists. If not it is a first run and shoud be run with --force-from-tape
            if(os.path.isfile("dump.bin")==False):