| | |
|---|
| | | # (pswitch=1: calc. p*dV energy contribution) |
|---|
| | | pswitch = 0 |
|---|
| | | # pressure difference: p_inside - p_outside (in units kT/l_min^3): |
|---|
| | | pressure=10.0 |
|---|
| | | pressure=10000.0 |
|---|
| | | |
|---|
| | | #Constant volume constraint (0 disable constant volume, 1 enable wiht additional vertex move, 2 enable with epsvol) |
|---|
| | | constvolswitch=0 |
|---|
| | |
|---|
| | | |
|---|
| | | |
|---|
| | | #Stretching |
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| | | stretchswitch=1 |
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| | | stretchswitch=0 |
|---|
| | | xkA0=1.0 |
|---|
| | | |
|---|
| | | ####### Polymer (brush) definitions ########### |
|---|
| | | # npoly is a number of polymers attached to npoly distinct vertices on vesicle |
|---|
| | | npoly=10 |
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| | | npoly=0 |
|---|
| | | # nmono is a number of monomers in each polymer |
|---|
| | | nmono=20 |
|---|
| | | # Spring constant between monomers of the polymer |
|---|
| | |
|---|
| | | R_nucleusY=0 |
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| | | R_nucleusZ=0 |
|---|
| | | ####### Cell definitions ############ |
|---|
| | | nxmax=100 |
|---|
| | | nymax=100 |
|---|
| | | nzmax=100 |
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| | | nxmax=150 |
|---|
| | | nymax=150 |
|---|
| | | nzmax=150 |
|---|
| | | |
|---|
| | | |
|---|
| | | ####### Program Control ############ |
|---|
| | |
|---|
| | | |
|---|
| | | |
|---|
| | | #number of vertices with spontaneous curvature (integer) |
|---|
| | | number_of_vertices_with_c0=100 |
|---|
| | | number_of_vertices_with_c0=0 |
|---|
| | | #c0/2 is spontaneous curvature. c0 is used as (c1+c1-c0)^2 in energy term (float) |
|---|
| | | c0=0.5 |
|---|
| | | #energy of attraction of vertices with spontaneous curvature (float, positive value for attraction) |
|---|
| | |
|---|
| | | |
|---|
| | | |
|---|
| | | #plane confinement |
|---|
| | | plane_confinement_switch=1 |
|---|
| | | plane_confinement_switch=0 |
|---|
| | | #final plane distance (float in lmin) |
|---|
| | | plane_d=10 |
|---|
| | | #plane to vesicle repulsion force while closing |
|---|
