trisurf-ng.git - Gitblit

			@@ -13,12 +13,14 @@
			import time
			import datetime
			import subprocess
			import shutil

			# Process status
			TS_NOLOCK=0 # lock file does not exist
			TS_NONEXISTANT=0 # process is not in the list of processes
			TS_STOPPED=1 # the process is listed, but is in stopped state
			TS_RUNNING=2 # process is running
			TS_COMPLETED=3 #simulation is completed

			class FileContent:
			'''
			@@ -209,7 +211,13 @@
			Method read() reads the statistics if it exists. It sets local variable dT storing the time differential between two intervals of simulation (outer loops). It also stores last simulation loop and the start of the run.
			'''
			if(self.exists()):
			# epoch1=0
			# epoch2=0
			# n1=0
			# n2=0
			nlines=self.mapcount()
			if nlines<2:
			return(False)
			try:
			with open(self.fullname, "r+") as fin:
			i=0;
			@@ -230,8 +238,10 @@
			else:
			#print("File "+self.fullname+" does not exists.\n")
			return(False)

			self.dT=(int(epoch2)-int(epoch1))/(int(n2)-int(n1))
			try:
			self.dT=(int(epoch2)-int(epoch1))/(int(n2)-int(n1))
			except:
			self.dT=0
			self.last=n2
			self.startDate=epoch1
			return(True)
			@@ -277,7 +287,7 @@
			version=root.find('trisurfversion')
			self.tape=Tape()
			self.tape.setTape(tapetxt.text)


			def getPID(self):
			self.Dir=Directory(maindir=self.maindir,simdir=self.subdir)
			#self.Dir.makeifnotexist()
			@@ -289,8 +299,27 @@
			fp.close()
			return int(pid)

			def getLastIteration(self):
			self.Dir=Directory(maindir=self.maindir,simdir=self.subdir)
			#self.Dir.makeifnotexist()
			try:
			fp = open(os.path.join(self.Dir.fullpath(),'.status'))
			except IOError as e:
			return -1 #file probably does not exist. e==2??
			status=fp.readline()
			fp.close()
			return int(status)

			def isCompleted(self):
			if (int(self.tape.getValue("iterations"))==self.getLastIteration()+1):
			return True
			else:
			return False

			def getStatus(self):
			pid=self.getPID()
			if(self.isCompleted()):
			return TS_COMPLETED
			if(pid==0):
			return TS_NOLOCK
			if(psutil.pid_exists(int(pid))):
			@@ -306,7 +335,11 @@
			return TS_NONEXISTANT

			def start(self):
			if(self.getStatus()==0):
			if(self.getStatus()==0 or self.getStatus()==TS_COMPLETED):
			#check if executable exists
			if(shutil.which('trisurf')==None):
			print("Error. Trisurf executable not found in PATH. Please install trisurf prior to running trisurf manager.")
			exit(1)
			self.Dir=Directory(maindir=self.maindir,simdir=self.subdir)
			#Symlinks tape file to the directory or create tape file from snapshot in the direcory...
			if(self.Dir.makeifnotexist()):
			@@ -319,7 +352,7 @@
			else:
			try:
			with open (os.path.join(self.Dir.fullpath(),"tape"), "w") as myfile:
			myfile.write("#This is automatically generated tape file from snapshot\n")
			myfile.write("#This is automatically generated tape file from snapshot")
			myfile.write(str(self.tape))
			except:
			print("Error -- cannot make tapefile "+ os.path.join(self.Dir.fullpath(),"tape")+" from the snapshot in the running directory")
			@@ -328,18 +361,26 @@
			os.symlink(os.path.abspath(self.snapshotFile), os.path.join(self.Dir.fullpath(),self.snapshotFile))
			except:
			print("Error while symlinking "+os.path.abspath(self.snapshotFile)+" to "+os.path.join(self.Dir.fullpath(),self.snapshotFile))


			#check if the simulation has been completed. in this case notify user and stop executing.
			if(self.isCompleted() and ("--force-from-tape" not in self.runArgs) and ("--reset-iteration-count" not in self.runArgs)):
			print("The simulation was completed. Not starting executable in "+self.Dir.fullpath())
			return

			cwd=Directory(maindir=os.getcwd())
			self.Dir.goto()
			print("Starting trisurf-ng executable at "+self.Dir.fullpath()+"\n")
			print("Starting trisurf-ng executable in "+self.Dir.fullpath())
			if(self.fromSnapshot==True):
			params=["trisurf", "--restore-from-vtk",self.snapshotFile]+self.runArgs
			else:
			#veify if dump exists. If not it is a first run and shoud be run with --force-from-tape
			if(os.path.isfile("dump.bin")==False):
			self.runArgs.append("--force-from-tape")
			params=["trisurf"]+self.runArgs
			subprocess.Popen (params, stdout=subprocess.DEVNULL)
			cwd.goto()
			else:
			print("Process already running. Not starting\n")
			print("Process in "+self.Dir.fullpath()+" already running. Not starting.")
			return

			def stop(self):
			@@ -364,20 +405,28 @@
			self.Dir=Directory(maindir=self.maindir,simdir=self.subdir)
			self.statistics=Statistics(self.Dir.fullpath(), statfile)
			self.Comment=FileContent(os.path.join(self.Dir.fullpath(),".comment"))
			pid=self.getPID();
			pid=self.getPID()
			status=self.getStatus()
			if(self.statistics.fileOK):
			ETA=str(datetime.timedelta(microseconds=(int(self.tape.config['iterations'])-int(self.statistics.last))self.statistics.dT)1000000)
			if(status==TS_NONEXISTANT or status==TS_NOLOCK):
			statustxt="Not running"
			pid=""
			ETA=""
			elif status==TS_STOPPED:
			statustxt="Stopped"
			ETA="N/A"
			elif status==TS_COMPLETED:
			statustxt="Completed"
			pid=""
			ETA=""
			else:
			statustxt="Running"

			if(self.statistics.fileOK):
			report=[time.strftime('%Y-%m-%d %H:%M:%S', time.localtime(int(self.statistics.startDate))),str(datetime.timedelta(microseconds=(int(self.tape.config['iterations'])-int(self.statistics.last))self.statistics.dT)1000000), statustxt, pid, str(self.Dir.fullpath()), self.Comment.getText()]
			report=[time.strftime('%Y-%m-%d %H:%M:%S', time.localtime(int(self.statistics.startDate))),ETA, statustxt, pid, str(self.Dir.fullpath()), self.Comment.getText()]
			else:
			report=["N/A","N/A\t",statustxt, pid, str(self.Dir.fullpath()), self.Comment.getText()]
			report=["N/A","N/A",statustxt, pid, str(self.Dir.fullpath()), self.Comment.getText()]
			return report

			def writeComment(self, data, mode='w'):