Trisurf Monte Carlo simulator
Samo Penic
2012-07-12 1ad6d1ed6bda8a11f0922c33445c6fb52c0ffa96
src/frame.c
@@ -9,13 +9,20 @@
    vesicle->cm[1]=0;
    vesicle->cm[2]=0;
    for(i=0;i<n;i++){
        vesicle->cm[0]+=vtx[i]->data->x;
        vesicle->cm[1]+=vtx[i]->data->y;
        vesicle->cm[2]+=vtx[i]->data->z;
        vesicle->cm[0]+=vtx[i]->x;
        vesicle->cm[1]+=vtx[i]->y;
        vesicle->cm[2]+=vtx[i]->z;
    } 
    vesicle->cm[0]/=(ts_float)n;
    vesicle->cm[1]/=(ts_float)n;
    vesicle->cm[2]/=(ts_float)n;
    for(i=0;i<n;i++){
        vtx[i]->x-=vesicle->cm[0];
        vtx[i]->y-=vesicle->cm[1];
        vtx[i]->z-=vesicle->cm[2];
    }
    return TS_SUCCESS;
}
@@ -25,32 +32,18 @@
    ts_double dcell;
    shift=(ts_double) vesicle->clist->ncmax[0]/2;
    dcell=1.0/(1.0 + vesicle->stepsize);
    //`fprintf(stderr, "Bil sem tu\n");
    cell_list_cell_occupation_clear(vesicle->clist);
    for(i=0;i<n;i++){
    cellidx=vertex_self_avoidance(vesicle, vesicle->vlist->vtx[i]);
    vesicle->vlist->vtx[i]->data->cell=vesicle->clist->cell[cellidx];
    vesicle->vlist->vtx[i]->cell=vesicle->clist->cell[cellidx];
    cell_add_vertex(vesicle->clist->cell[cellidx],vesicle->vlist->vtx[i]);
  //  if(ncx > vesicle->clist.ncmax[0]) vesicle->clist.ncmax[0]=ncx;
  //  if(ncy > vesicle->clist.ncmax[1]) vesicle->clist.ncmax[1]=ncy;
  //  if(ncz > vesicle->clist.ncmax[2]) vesicle->clist.ncmax[2]=ncz;
    }
    //fprintf(stderr, "Bil sem tu\n"); 
/* This was already done in previous for loop.... Have I gained some time?
    for(i=0;i<vesicle->clist.ncmax[0]*vesicle->clist.ncmax[1]*vesicle->clist.ncmax[2];i++){
        vesicle->clist.cell[i].nvertex=0;
        for(j=0;j<vesicle->vlist.n;j++){
            //add_vertextocell;
            //add_vertextomonomer;
        }
    }
*/
   if(dcell);
   if(shift);
    return TS_SUCCESS;
}