| | |
|---|
| | | #Constant area constraint (0 disable constant area, 2 enable constant area with epsarea) |
|---|
| | | constareaswitch=0 |
|---|
| | | |
|---|
| | | |
|---|
| | | #Stretching |
|---|
| | | stretchswitch=1 |
|---|
| | | xkA0=1.0 |
|---|
| | | |
|---|
| | | ####### Polymer (brush) definitions ########### |
|---|
| | | # npoly is a number of polymers attached to npoly distinct vertices on vesicle |
|---|
| | | npoly=400 |
|---|
| | | npoly=0 |
|---|
| | | # nmono is a number of monomers in each polymer |
|---|
| | | nmono=10 |
|---|
| | | # Spring constant between monomers of the polymer |
|---|
| | |
|---|
| | | mcsweeps=200 |
|---|
| | | #how many initial mcsweeps*inititer MC sweeps before recording to disk? |
|---|
| | | #2 |
|---|
| | | inititer=1 |
|---|
| | | inititer=0 |
|---|
| | | #how many records do you want on the disk iteration are there in a run? |
|---|
| | | #10000 |
|---|
| | | iterations=100 |
|---|
| | |
|---|
| | | #max number of processes in distributed (voluntary) environment |
|---|
| | | distributed_processes=50 |
|---|
| | | #cuda options??? |
|---|
| | | |
|---|
| | | |
|---|
| | | #number of vertices with spontaneous curvature (integer) |
|---|
| | | number_of_vertices_with_c0=100 |
|---|
| | | #c0/2 is spontaneous curvature. c0 is used as (c1+c1-c0)^2 in energy term (float) |
|---|
| | | c0=0.5 |
|---|
| | | #energy of attraction of vertices with spontaneous curvature (float, positive value for attraction) |
|---|
| | | w=10.0 |
|---|
| | | #direct force on vesicles with spontaneous curvature (float) |
|---|
| | | F=2.0 |
|---|
| | | |
|---|
| | | |
|---|
| | | |
|---|
| | | #plane confinement |
|---|
| | | plane_confinement_switch=1 |
|---|
| | | #final plane distance (float in lmin) |
|---|
| | | plane_d=10 |
|---|
| | | #plane to vesicle repulsion force while closing |
|---|
| | | plane_F=10 |
|---|
