| | |
| | | ####### Vesicle definitions ########### |
| | | # nshell is a number of divisions of dipyramid |
| | | nshell=17 |
| | | nshell=10 |
| | | # dmax is the max. bond length (in units l_min) |
| | | dmax=1.7 |
| | | # dmin_interspecies in the min. dist. between different vertex species (in units l_min) |
| | |
| | | |
| | | ####### Polymer (brush) definitions ########### |
| | | # npoly is a number of polymers attached to npoly distinct vertices on vesicle |
| | | npoly=3 |
| | | npoly=0 |
| | | # nmono is a number of monomers in each polymer |
| | | nmono=10 |
| | | nmono=2 |
| | | # Spring constant between monomers of the polymer |
| | | k_spring=800 |
| | | |
| | | ####### Filament (inside the vesicle) definitions ########### |
| | | # nfil is a number of filaments inside the vesicle |
| | | nfil=2 |
| | | nfil=0 |
| | | # nfono is a number of monomers in each filament |
| | | nfono=300 |
| | | nfono=3 |
| | | # Persistence lenght of the filaments (in units l_min) |
| | | xi=100 |
| | | |
| | | ####### Nucleus (inside the vesicle) ########### |
| | | # Radius of an impenetrable hard sphere inside the vesicle |
| | | R_nucleus=0 |
| | | R_nucleusX=6.0 |
| | | R_nucleusY=12.0 |
| | | R_nucleusZ=6.0 |
| | | R_nucleusX=0 |
| | | R_nucleusY=0 |
| | | R_nucleusZ=0 |
| | | ####### Cell definitions ############ |
| | | nxmax=60 |
| | | nymax=60 |
| | |
| | | |
| | | #NirGov branch only! |
| | | #number of vertices with spontaneous curvature (integer) |
| | | number_of_vertices_with_c0=300 |
| | | number_of_vertices_with_c0=30 |
| | | #spontaneous curvature (float) |
| | | c0=0.5 |
| | | #energy of attraction of vertices with spontaneous curvature (float, positive value for attraction) |
| | | w=10.0 |
| | | w=100.0 |
| | | |