Started with arg parsing

Samo Penic

2014-03-06 083e03adeaf985c9da1ed31d259ced9bb54c207c

 src/main.c

@@ -10,6 +10,7 @@
#include "initial_distribution.h"
#include "frame.h"
#include "timestep.h"
#include "poly.h"

/** Entrance function to the program
  * @param argv is a number of parameters used in program call (including the program name
@@ -18,23 +19,29 @@
*/

int main(int argv, char *argc[]){
ts_uint inititer,mcsweeps, iterations;
ts_vesicle *vesicle, *vesicle1;


parse_args(argv,argc);

/* THIS SHOULD GO INTO UNIT TEST
ts_bool retval;
ts_uint i;
    ts_vertex_list *vlist=init_vertex_list(5);
ts_vertex_list *vlist1;
ts_bond_list *blist=init_bond_list();
ts_triangle_list *tlist=init_triangle_list();
ts_cell_list *clist=init_cell_list(3,3,3,0.3);
ts_vesicle *vesicle;

retval=vtx_add_cneighbour(blist,vlist->vtx[1],vlist->vtx[0]);
if(retval==TS_FAIL) printf("1. already a member or vertex is null!\n");

retval=vtx_add_cneighbour(blist,vlist->vtx[0],vlist->vtx[1]);
retval=vtx_add_neighbour(vlist->vtx[0],vlist->vtx[1]);
if(retval==TS_FAIL) printf("2. already a member or vertex is null!\n");

retval=vtx_remove_neighbour(vlist->vtx[0],vlist->vtx[1]);
fprintf(stderr,"Was here");
retval=vtx_remove_neighbour(vlist->vtx[1],vlist->vtx[0]);
vtx_add_neighbour(vlist->vtx[0],vlist->vtx[1]);
fprintf(stderr,"Was here too!\n");

vlist->vtx[0]->x=1.0;
vlist->vtx[0]->x=1.1;
@@ -60,24 +67,23 @@

vtx_list_free(vlist1);
printf("Tests complete.\n");
vesicle=initial_distribution_dipyramid(8,60,60,60,0.15);
//parsetape(vesicle,&i);
*/
if(force_from_tape){
ts_fprintf(stdout,"****************************************************\n");
ts_fprintf(stdout,"**** Reinitializing initial geometry from tape *****\n");
ts_fprintf(stdout,"****************************************************\n\n");
vesicle=parsetape(&mcsweeps, &inititer, &iterations);
} else {

//these four must come from parsetype!
vesicle->dmax=1.67;
vesicle->stepsize=0.15;
vesicle->clist->max_occupancy=8;
vesicle->bending_rigidity=25.0;
fprintf(stderr,"xk=%f",vesicle->bending_rigidity);
ts_fprintf(stdout,"**********************************************************************\n");
ts_fprintf(stdout,"**** Recreating vesicle from dump file and continuing simulation *****\n");
ts_fprintf(stdout,"**********************************************************************\n\n");
vesicle1=parsetape(&mcsweeps, &inititer, &iterations);
vesicle=restore_state();
vesicle_free(vesicle1);
}

centermass(vesicle);
cell_occupation(vesicle);
for(i=0;i<10000;i++){
single_timestep(vesicle);
if(i%100==0){
write_vertex_xml_file(vesicle,i/100);
}
}
run_simulation(vesicle, mcsweeps, inititer, iterations);
write_master_xml_file("test.pvd");
write_dout_fcompat_file(vesicle,"dout");
vesicle_free(vesicle);