| | |
| | | |
| | | # Pressure calculations |
| | | # (pswitch=1: calc. p*dV energy contribution) |
| | | pswitch = 0 |
| | | pswitch = 1 |
| | | # pressure difference: p_inside - p_outside (in units kT/l_min^3): |
| | | pressure=10.0 |
| | | pressure=-10.0 |
| | | |
| | | #Constant volume constraint (0 disable constant volume, 1 enable wiht additional vertex move, 2 enable with epsvol) |
| | | constvolswitch=0 |
| | |
| | | |
| | | #Constant area constraint (0 disable constant area, 2 enable constant area with epsarea) |
| | | constareaswitch=0 |
| | | |
| | | |
| | | #Stretching |
| | | stretchswitch=1 |
| | | xkA0=1.0 |
| | | |
| | | ####### Polymer (brush) definitions ########### |
| | | # npoly is a number of polymers attached to npoly distinct vertices on vesicle |
| | |
| | | ####### Program Control ############ |
| | | #how many MC sweeps between subsequent records of states to disk |
| | | #200000 |
| | | mcsweeps=2000 |
| | | mcsweeps=200 |
| | | #how many initial mcsweeps*inititer MC sweeps before recording to disk? |
| | | #2 |
| | | inititer=1 |
| | | inititer=0 |
| | | #how many records do you want on the disk iteration are there in a run? |
| | | #10000 |
| | | iterations=100 |
| | |
| | | #cuda options??? |
| | | |
| | | |
| | | #NirGov branch only! |
| | | #number of vertices with spontaneous curvature (integer) |
| | | number_of_vertices_with_c0=100 |
| | | #spontaneous curvature (float) |
| | | #c0/2 is spontaneous curvature. c0 is used as (c1+c1-c0)^2 in energy term (float) |
| | | c0=0.5 |
| | | #energy of attraction of vertices with spontaneous curvature (float, positive value for attraction) |
| | | w=10.0 |
| | | #direct force on vesicles with spontaneous curvature (float) |
| | | F=2.0 |
| | | |
| | | |
| | | |
| | | #plane confinement |
| | | plane_confinement_switch=1 |
| | | #final plane distance (float in lmin) |
| | | plane_d=10 |
| | | #plane to vesicle repulsion force while closing |
| | | plane_F=10 |