| | |
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| | | ts_cluster._fields_=[('nvtx',c_uint),('idx',c_uint),('vtx', POINTER(POINTER(ts_vertex)))] |
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| | | |
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| | | class ts_cluster_list(Structure): |
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| | | _fields_=[('n',c_uint),('poly',POINTER(POINTER(ts_cluster)))] |
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| | | _fields_=[('n',c_uint),('cluster',POINTER(POINTER(ts_cluster)))] |
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| | | |
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| | | |
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| | | ts=CDLL('libtrisurf.so') |
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| | | |
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| | | |
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| | | |
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| | | #function call wrappers |
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| | | def create_vesicle_from_tape(tape): |
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| | | """Using pointer for tape, it creates a vesicle, returning pointer to it.""" |
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| | | ts.create_vesicle_from_tape.argtype=POINTER(ts_tape) |
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| | | ts.create_vesicle_from_tape.restype=POINTER(ts_vesicle) |
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| | | return ts.create_vesicle_from_tape(tape) |
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| | | |
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| | | def parsetape(filename='tape'): |
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| | | """Loads tape with filename (if not given it defaults to 'tape'). It returns a pointer to structure for tape""" |
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| | | ts.parsetape.restype=POINTER(ts_tape) |
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| | | ts.parsetape.argtype=[c_char_p] |
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| | | return ts.parsetape(filename.encode('ascii')) |
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| | | |
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| | | def parseDump(filename): |
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| | | """Loads a vtu file with 'filename' and creates a vesicle returning pointer to it""" |
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| | | ts.parseDump.argtype=[c_char_p] |
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| | | ts.parseDump.restype=POINTER(ts_vesicle) |
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| | | vesicle=ts.parseDump(filename.encode('ascii')) |
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| | | return vesicle |
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| | | |
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| | | def single_timestep(vesicle): |
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| | | """Makes a single timestep in simulations. Returns a tuple of vmsrt and bfrt (vertex move success rate and bond flip success rate)""" |
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| | | ts.single_timestep.argtype=[POINTER(ts_vesicle),POINTER(c_double),POINTER(c_double)] |
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| | | vmsrt=c_double(0.0) |
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| | | bfsrt=c_double(0.0) |
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| | | ts.single_timestep(vesicle,byref(vmsrt),byref(bfsrt)) |
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| | | return (vmsrt.value, bfsrt.value) |
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| | | |
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| | | def write_vertex_xml_file(vesicle,timestep_no=0): |
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| | | """Writes a vesicle into file with filename 'timestep_XXXXXX.vtu', where XXXXXX is a leading zeroed number given with timestep_no parameter (defaults to 0 if not given""" |
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| | | ts.write_vertex_xml_file.argtypes=[POINTER(ts_vesicle),c_int] |
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| | | ts.write_vertex_xml_file(vesicle,c_int(timestep_no)) |
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| | | |
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| | | |
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| | | def vesicle_free(vesicle): |
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| | | """Free memory of the whole vesicle""" |
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| | | ts.vesicle_free.argtype=[POINTER(ts_vesicle)] |
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| | | ts.vesicle_free(vesicle) |
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| | | |
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| | | def vesicle_volume(vesicle): |
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| | | ts.vesicle_volume.argtype=[POINTER(ts_vesicle)] |
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| | | ts.vesicle_volume(vesicle) |
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| | | |
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| | | def vesicle_area(vesicle): |
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| | | ts.vesicle_area.argtype=[POINTER(ts_vesicle)] |
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| | | ts.vesicle_area(vesicle) |
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| | | |
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| | | def gyration_eigen(vesicle): |
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| | | ts.gyration_eigen.argtype=[POINTER(ts_vesicle), POINTER(c_double), POINTER(c_double), POINTER(c_double)] |
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| | | l1=c_double(0.0) |
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| | | l2=c_double(0.0) |
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| | | l3=c_double(0.0) |
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| | | ts.gyration_eigen(vesicle , byref(l1), byref(l2), byref(l3)) |
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| | | return (l1.value, l2.value, l3.value) |
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| | | |
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| | | def vesicle_meancurvature(vesicle): |
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| | | ts.vesicle_meancurvature.argtype=[POINTER(ts_vesicle)] |
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| | | ts.vesicle_meancurvature.restype=c_double |
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| | | return ts.vesicle_meancurvature(vesicle) |
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| | | |
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| | | def init_cluster_list(): |
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| | | ts.init_cluster_list.restype=POINTER(ts_cluster_list) |
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| | | ret=ts.init_cluster_list() |
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| | | return ret |
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| | | |
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| | | def clusterize_vesicle(vesicle, cluster_list): |
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| | | ts.clusterize_vesicle.argtype=[POINTER(ts_vesicle), POINTER(ts_cluster_list)] |
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| | | ts.clusterize_vesicle(vesicle, cluster_list) |
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| | | |
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| | | def cluster_list_free(cluster_list): |
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| | | """Free memory of cluster list""" |
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| | | ts.cluster_list_free.argtype=[POINTER(ts_cluster_list)] |
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| | | ts.cluster_list_free(cluster_list) |
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