#ifndef _IO_H
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#define _IO_H
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/** @ Global variables for I/O operations like filenames etc. */
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/*static char mastername[1024];
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static char prefixname[1024];
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static ts_bool restore=0;
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static char tape[1024]; */
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int force_from_tape;
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typedef struct {
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long int nshell;
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long int ncxmax;
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long int ncymax;
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long int nczmax;
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long int npoly;
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long int nmono;
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long int nfil;
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long int nfono;
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long int R_nucleus;
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long int pswitch;
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char *multiprocessing;
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long int brezveze0;
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long int brezveze1;
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long int brezveze2;
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ts_double xk0;
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ts_double dmax;
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ts_double stepsize;
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ts_double kspring;
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ts_double xi;
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ts_double pressure;
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long int iterations;
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long int inititer;
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long int mcsweeps;
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long int quiet;
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} ts_tape;
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typedef struct{
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ts_int force_from_tape;
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ts_int reset_iteration_count;
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char path[1024]; //path where all files should be added
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char output_fullfilename[1024]; //name of the master file
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char dump_fullfilename[1024]; //name of the dump file
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char tape_fullfilename[1024]; //name of the tape file
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} ts_args;
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ts_args command_line_args;
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ts_bool parse_args(int argc, char **argv);
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/** @brief Prints the position of vertices for the whole list
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*
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* The function is meant more or less as a debug tool, but can be used in production
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* environment aswell.
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* the output is in form of idx: x y z
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* @param *vlist is a structure holding information on vertex list.
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* @returns TS_SUCCESS on successful execution, TS_FAIL otherwise.
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*/
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ts_bool print_vertex_list(ts_vertex_list *vlist);
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/** @brief Prints the neighbours of all the vertices
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*
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* The function is meant more or less as a debug tool, but can be used in production
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* environment aswell.
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* the output is in form of idx(number of neighbours): (x1,y1,z1) (x2,y2,z2) ...
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* @param *vlist is a structure holding information on vertex list.
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* @returns TS_SUCCESS on successful execution, TS_FAIL otherwise.
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*/
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ts_bool print_vertex_neighbours(ts_vertex_list *vlist);
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/** @brief Function outputs the vetex list file to comply to old fortran format
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*
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* @param *vlist is a list of vertices
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* @param *filename is a name of the output file to be created (note that if the file already
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* exists it will be overwritten.
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*/
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ts_bool write_vertex_fcompat_file(ts_vertex_list *vlist,ts_char *filename);
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ts_bool fprint_vertex_list(FILE *fh,ts_vertex_list *vlist);
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ts_bool fprint_tristar(FILE *fh, ts_vesicle *vesicle);
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ts_bool fprint_triangle_list(FILE *fh, ts_vesicle *vesicle);
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ts_bool fprint_vertex_data(FILE *fh,ts_vertex_list *vlist);
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ts_bool fprint_bonds(FILE *fh,ts_vesicle *vesicle);
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ts_bool write_dout_fcompat_file(ts_vesicle *vesicle, ts_char *filename);
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ts_bool read_tape_fcompat_file(ts_vesicle *vesicle, ts_char *filename);
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/** @brief Outputs file in vtk format, compatible with paraview.
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*
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* @param *vlist is a list of vertices
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* @param *filename is a name of the output file. If exists, it will be overwritten
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* @param *text is a description line (max. 255 characters) to be included in the file
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*/
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ts_bool write_vertex_vtk_file(ts_vesicle *vesicle,ts_char *filename, ts_char *text);
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ts_bool write_vertex_xml_file(ts_vesicle *vesicle, ts_uint timestepno);
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ts_bool write_master_xml_file(ts_char *filename);
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ts_tape *parsetape(char *filename);
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ts_bool tape_free(ts_tape *tape);
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ts_bool dump_state(ts_vesicle *vesicle, ts_uint iteration);
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ts_vesicle *restore_state(ts_uint *iteration);
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#endif
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