#include<stdlib.h>
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#include<unistd.h>
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#include"general.h"
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#include"vesicle.h"
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#include "memory.h"
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ts_bool init_memory_block(ts_memory *mem){
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/* calculate number of bonds, triangles */
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ts_uint nbonds=3*(mem->vertex_no-2);
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ts_uint ntria=2*(mem->vertex_no-2);
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ts_uint ncells=mem->ncmax[0]*mem->ncmax[1]*mem->ncmax[2];
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ts_uint memsize=sizeof(ts_vesicle)+
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sizeof(ts_vertex_list)+ sizeof(ts_bond_list)+ sizeof(ts_triangle_list) +
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sizeof(ts_cell_list) +
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mem->vertex_no*(sizeof(ts_vertex)+sizeof(ts_vertex *)) +
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nbonds*(sizeof(ts_bond)+sizeof(ts_bond *))+
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ntria*(sizeof(ts_triangle)+ sizeof(ts_triangle *))+
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ncells*(sizeof(ts_cell)+ sizeof(ts_cell *))+
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MAX_VTXNEIGH*mem->vertex_no*sizeof(ts_vertex *)+
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MAX_TRISTAR*mem->vertex_no*sizeof(ts_triangle *)+
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MAX_VTXNEIGH*mem->vertex_no*sizeof(ts_bond *)+
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3*ntria*sizeof(ts_triangle *)+
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MAX_CELL_OCCUPANCY*ncells*sizeof(ts_vertex *);
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/* here add size of memory for additional structures!!! */
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printf("The page size for this system is %ld bytes.\n",
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sysconf(_SC_PAGESIZE)); /* _SC_PAGE_SIZE is OK too. */
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printf("We need to initialize %d B of memory to hold info about vesicle\n",memsize);
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void *ptr=calloc(1,memsize);
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if(ptr==NULL) fatal("Couldn't initialize memory block in memory.c", TS_ERR_MEM_ALLOC);
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/*initialize pointers */
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void *rptr=ptr;
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//Vesicle and basic lists
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mem->vesicle=(ts_vesicle *)rptr;
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rptr+=sizeof(ts_vesicle);
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mem->vlist=(ts_vertex_list *)rptr;
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rptr+=sizeof(ts_vertex_list);
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mem->blist=(ts_bond_list *)rptr;
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rptr+=sizeof(ts_bond_list);
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mem->tlist=(ts_triangle_list *)rptr;
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rptr+=sizeof(ts_triangle_list);
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mem->clist=(ts_cell_list *)rptr;
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rptr+=sizeof(ts_cell_list);
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//Vertex related memory
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mem->vtx_ptr=(ts_vertex **)rptr;
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rptr+=mem->vertex_no*sizeof(ts_vertex *);
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mem->vtx=(ts_vertex *)rptr;
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rptr+=mem->vertex_no*sizeof(ts_vertex);
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mem->vtx_neighbours_ptr=(ts_vertex **)rptr;
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rptr+=mem->vertex_no*MAX_VTXNEIGH*sizeof(ts_vertex *);
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mem->tristar=(ts_triangle **)rptr;
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rptr+=mem->vertex_no*MAX_TRISTAR*sizeof(ts_triangle *);
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mem->vtx_neighbond=(ts_bond **)rptr;
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rptr+=mem->vertex_no*MAX_VTXNEIGH*sizeof(ts_bond *);
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//Bond related memory
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mem->bond_ptr=(ts_bond **)rptr;
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rptr+=nbonds*sizeof(ts_bond *);
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mem->bond=(ts_bond *)rptr;
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rptr+=nbonds*sizeof(ts_bond);
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//Triangle related memory
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mem->tria_ptr=(ts_triangle **)rptr;
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rptr+=ntria*sizeof(ts_triangle *);
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mem->tria=(ts_triangle *)rptr;
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rptr+=ntria*sizeof(ts_triangle);
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mem->trianeigh=(ts_triangle **)rptr;
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rptr+=ntria*3*sizeof(ts_triangle *);
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//Cell related memory
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mem->cell_ptr=(ts_cell **)rptr;
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rptr+=ncells*sizeof(ts_cell *);
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mem->cell=(ts_cell *)rptr;
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rptr+=ncells*sizeof(ts_cell);
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mem->cell_ocupancy=(ts_vertex **)rptr;
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rptr+= MAX_CELL_OCCUPANCY*ncells*sizeof(ts_vertex *);
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printf("Ptr diff in b=%ld\n",(rptr-ptr));
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return TS_SUCCESS;
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}
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