/* vim: set ts=4 sts=4 sw=4 noet : */
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#include<stdio.h>
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#include<math.h>
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#include<stdlib.h>
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#include "general.h"
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//#include "vertex.h"
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//#include "bond.h"
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//#include "triangle.h"
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//#include "cell.h"
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#include "vesicle.h"
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#include "io.h"
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//#include "initial_distribution.h"
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//#include "frame.h"
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//#include "timestep.h"
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//#include "poly.h"
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#include "stats.h"
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#include "sh.h"
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#include "shcomplex.h"
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#include "dumpstate.h"
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#include "restore.h"
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#include "cluster.h"
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#include <string.h>
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#include <getopt.h>
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#include <sys/stat.h>
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#include <sys/types.h>
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#include <dirent.h>
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#include <errno.h>
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#include <snapshot.h>
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#include<gsl/gsl_complex.h>
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#include<gsl/gsl_complex_math.h>
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#include<stdio.h>
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#include "globals.h"
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ts_vesicle *restoreVesicle(char *filename){
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ts_vesicle *vesicle = parseDump(filename);
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return vesicle;
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}
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void vesicle_calculate_ulm2(ts_vesicle *vesicle){
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//complex_sph_free(vesicle->sphHarmonics);
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//vesicle->sphHarmonics=complex_sph_init(vesicle->vlist,21);
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vesicle_volume(vesicle);
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preparationSh(vesicle,getR0(vesicle));
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calculateUlmComplex(vesicle);
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ts_int i,j;
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for(i=0;i<vesicle->sphHarmonics->l;i++){
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for(j=i;j<2*i+1;j++){
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printf("%e ", gsl_complex_abs2(vesicle->sphHarmonics->ulmComplex[i][j]));
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}
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}
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printf("\n");
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}
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int count_bonds_with_energy(ts_bond_list *blist){
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unsigned int i, cnt;
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cnt=0;
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for(i=0;i<blist->n;i++){
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if(fabs(blist->bond[i]->energy)>1e-16) cnt++;
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}
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return cnt;
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}
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ts_bool write_histogram_data(ts_uint timestep_no, ts_vesicle *vesicle){
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ts_cluster_list *cstlist=init_cluster_list();
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clusterize_vesicle(vesicle,cstlist);
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//printf("No clusters=%d\n",cstlist->n);
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int k,i,cnt, test=0;
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int max_nvtx=0;
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char filename[255];
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sprintf(filename,"histogram_%.6u.csv",timestep_no);
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FILE *fd=fopen(filename,"w");
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fprintf(fd,"Number_of_vertices_in cluster Number_of_clusters\n");
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for(k=0;k<cstlist->n;k++)
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if(cstlist->cluster[k]->nvtx>max_nvtx) max_nvtx=cstlist->cluster[k]->nvtx;
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//printf("Max. number of vertices in cluster: %d\n",max_nvtx);
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for(i=1;i<=max_nvtx;i++){
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cnt=0;
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for(k=0;k<cstlist->n;k++)
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if(cstlist->cluster[k]->nvtx==i) cnt++;
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fprintf(fd,"%d %d\n",i,cnt);
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test+=cnt*i;
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}
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//for(k=0;k<cstlist->n;k++){
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// printf("*Cluster %d has %d vertices\n",k,cstlist->cluster[k]->nvtx);
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// }
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fclose(fd);
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// printf("*Sum of all vertices in clusters: %d\n", test);
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// write_vertex_xml_file(vesicle,timestep_no,cstlist);
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cluster_list_free(cstlist);
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return TS_SUCCESS;
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}
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int main(){
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ts_vesicle *vesicle;
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ts_char *i,*j;
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ts_uint tstep,n;
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ts_char *number;
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struct dirent **list;
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ts_double l1,l2,l3,hbar;
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int count;
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ts_fprintf(stderr,"TRISURF-NG v. %s, compiled on: %s %s.\n", TS_VERSION, __DATE__, __TIME__);
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fprintf(stdout, "OuterLoop Volume Area lamdba1 lambda2 lambda3 Nbw/Nb hbar\n");
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count=scandir(".",&list,0,alphasort);
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if(count<0){
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fatal("Error, cannot open directory.",1);
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}
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tstep=0;
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for(n=0;n<count;n++){
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struct dirent *ent;
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ent=list[n];
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i=rindex(ent->d_name,'.');
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if(i==NULL) {
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continue;
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}
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if(strcmp(i+1,"vtu")==0){
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j=rindex(ent->d_name,'_');
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if(j==NULL) continue;
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number=strndup(j+1,j-i);
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quiet=1;
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ts_fprintf(stdout,"timestep: %u filename: %s\n",atoi(number),ent->d_name);
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// printf("%u ",atoi(number));
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vesicle=restoreVesicle(ent->d_name);
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// vesicle_calculate_ulm2(vesicle);
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vesicle_volume(vesicle);
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vesicle_area(vesicle);
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gyration_eigen(vesicle,&l1,&l2,&l3);
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hbar=vesicle_meancurvature(vesicle)/vesicle->area;
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fprintf(stdout,"%d %.17e %.17e %.17e %.17e %.17e %.17e %.17e\n",atoi(number),vesicle->volume, vesicle->area,l1,l2,l3, (ts_double)count_bonds_with_energy(vesicle->blist)/(ts_double)vesicle->blist->n,hbar);
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tstep++;
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write_histogram_data(atoi(number), vesicle);
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free(number);
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tape_free(vesicle->tape);
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vesicle_free(vesicle);
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}
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}
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for (n = 0; n < count; n++)
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{
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free(list[n]);
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}
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free(list);
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return 0;
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}
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