#include<stdio.h>
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#include<math.h>
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#include "general.h"
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#include "vertex.h"
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#include "bond.h"
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#include "triangle.h"
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#include "cell.h"
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#include "vesicle.h"
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#include "io.h"
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#include "initial_distribution.h"
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#include "frame.h"
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#include "timestep.h"
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#include "poly.h"
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/** Entrance function to the program
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* @param argv is a number of parameters used in program call (including the program name
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* @param argc is a pointer to strings (character arrays) which holds the arguments
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* @returns returns 0 on success, any other number on fail.
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*/
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int main(int argv, char *argc[]){
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ts_uint inititer,mcsweeps, iterations;
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ts_vesicle *vesicle, *vesicle1;
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parse_args(argv,argc);
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/* THIS SHOULD GO INTO UNIT TEST
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ts_bool retval;
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ts_vertex_list *vlist=init_vertex_list(5);
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ts_vertex_list *vlist1;
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ts_bond_list *blist=init_bond_list();
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ts_triangle_list *tlist=init_triangle_list();
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ts_cell_list *clist=init_cell_list(3,3,3,0.3);
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retval=vtx_add_cneighbour(blist,vlist->vtx[1],vlist->vtx[0]);
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if(retval==TS_FAIL) printf("1. already a member or vertex is null!\n");
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retval=vtx_add_neighbour(vlist->vtx[0],vlist->vtx[1]);
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if(retval==TS_FAIL) printf("2. already a member or vertex is null!\n");
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fprintf(stderr,"Was here");
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retval=vtx_remove_neighbour(vlist->vtx[1],vlist->vtx[0]);
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vtx_add_neighbour(vlist->vtx[0],vlist->vtx[1]);
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fprintf(stderr,"Was here too!\n");
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vlist->vtx[0]->x=1.0;
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vlist->vtx[0]->x=1.1;
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vlist1=vertex_list_copy(vlist);
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bond_add(blist, vlist->vtx[1],vlist->vtx[0]);
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triangle_add(tlist,vlist->vtx[1],vlist->vtx[2],vlist->vtx[3]);
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triangle_add(tlist,vlist->vtx[1],vlist->vtx[2],vlist->vtx[3]);
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printf("Cell idx=1 has vertices=%u\n",clist->cell[0]->nvertex);
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cell_add_vertex(clist->cell[0], vlist->vtx[0]);
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printf("Cell idx=1 has vertices=%u\n",clist->cell[0]->nvertex);
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printf("Cell idx=1 has vertex[0] has x coordinate=%e\n",clist->cell[0]->vertex[0]->x);
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cell_list_cell_occupation_clear(clist);
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printf("Cell idx=1 has vertices=%u\n",clist->cell[0]->nvertex);
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cell_add_vertex(clist->cell[0], vlist->vtx[0]);
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triangle_list_free(tlist);
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bond_list_free(blist);
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vtx_list_free(vlist);
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cell_list_free(clist);
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vtx_list_free(vlist1);
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printf("Tests complete.\n");
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*/
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if(force_from_tape){
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ts_fprintf(stdout,"****************************************************\n");
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ts_fprintf(stdout,"**** Reinitializing initial geometry from tape *****\n");
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ts_fprintf(stdout,"****************************************************\n\n");
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vesicle=parsetape(&mcsweeps, &inititer, &iterations);
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} else {
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ts_fprintf(stdout,"**********************************************************************\n");
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ts_fprintf(stdout,"**** Recreating vesicle from dump file and continuing simulation *****\n");
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ts_fprintf(stdout,"**********************************************************************\n\n");
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vesicle1=parsetape(&mcsweeps, &inititer, &iterations);
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vesicle=restore_state();
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vesicle_free(vesicle1);
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}
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run_simulation(vesicle, mcsweeps, inititer, iterations);
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write_master_xml_file("test.pvd");
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write_dout_fcompat_file(vesicle,"dout");
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vesicle_free(vesicle);
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return 0; //program finished perfectly ok. We return 0.
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}
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