####### Vesicle definitions ###########
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# nshell is a number of divisions of dipyramid
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nshell=17
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# dmax is the max. bond length (in units l_min)
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dmax=1.7
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# dmin_interspecies in the min. dist. between different vertex species (in units l_min)
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dmin_interspecies=1.2
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# bending rigidity of the membrane (in units kT)
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xk0=10.0
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# max step size (in units l_min)
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stepsize=0.15
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# Pressure calculations
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# (pswitch=1: calc. p*dV energy contribution)
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pswitch = 1
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# pressure difference: p_inside - p_outside (in units kT/l_min^3):
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pressure=-10.0
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#Constant volume constraint (0 disable constant volume, 1 enable wiht additional vertex move, 2 enable with epsvol)
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constvolswitch=0
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constvolprecision=1e-14
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#Constant area constraint (0 disable constant area, 2 enable constant area with epsarea)
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constareaswitch=0
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#Stretching
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stretchswitch=1
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xkA0=1.0
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####### Polymer (brush) definitions ###########
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# npoly is a number of polymers attached to npoly distinct vertices on vesicle
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npoly=0
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# nmono is a number of monomers in each polymer
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nmono=10
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# Spring constant between monomers of the polymer
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k_spring=800
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#set to 1 if half of the polymeres are inside the vesicle
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internal_poly=1
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####### Filament (inside the vesicle) definitions ###########
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# nfil is a number of filaments inside the vesicle
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nfil=0
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# nfono is a number of monomers in each filament
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nfono=3
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# Persistence lenght of the filaments (in units l_min)
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xi=100
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####### Nucleus (inside the vesicle) ###########
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# Radius of an impenetrable hard sphere inside the vesicle
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R_nucleus=0
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R_nucleusX=0
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R_nucleusY=0
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R_nucleusZ=0
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####### Cell definitions ############
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nxmax=60
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nymax=60
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nzmax=60
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####### Program Control ############
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#how many MC sweeps between subsequent records of states to disk
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#200000
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mcsweeps=200
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#how many initial mcsweeps*inititer MC sweeps before recording to disk?
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#2
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inititer=0
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#how many records do you want on the disk iteration are there in a run?
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#10000
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iterations=100
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###### Spherical harmonics ###########
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# If 0 then spherical harmonics are not calculated at all.
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spherical_harmonics_coefficients=21
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#shut up if we are using cluster!!!
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quiet=false
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#what type of multiprocessing? (*none, smp, cluster, distributed, cuda, auto)
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#currently only none makes sense.
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multiprocessing=none
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#how many cores are allowed to process in SMP?
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smp_cores=2
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#how many nodes in cluster?
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cluster_nodes=50
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#max number of processes in distributed (voluntary) environment
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distributed_processes=50
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#cuda options???
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#number of vertices with spontaneous curvature (integer)
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number_of_vertices_with_c0=100
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#c0/2 is spontaneous curvature. c0 is used as (c1+c1-c0)^2 in energy term (float)
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c0=0.5
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#energy of attraction of vertices with spontaneous curvature (float, positive value for attraction)
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w=10.0
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#direct force on vesicles with spontaneous curvature (float)
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F=2.0
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#plane confinement
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plane_confinement_switch=1
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#final plane distance (float in lmin)
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plane_d=10
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#plane to vesicle repulsion force while closing
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plane_F=10
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