/* vim: set ts=4 sts=4 sw=4 noet : */
|
#include<stdio.h>
|
#include<math.h>
|
#include<stdlib.h>
|
#include "general.h"
|
#include "vertex.h"
|
#include "bond.h"
|
#include "triangle.h"
|
#include "cell.h"
|
#include "vesicle.h"
|
#include "io.h"
|
#include "initial_distribution.h"
|
#include "frame.h"
|
#include "timestep.h"
|
#include "poly.h"
|
#include "sh.h"
|
#include "shcomplex.h"
|
#include "dumpstate.h"
|
#include "restore.h"
|
|
#include <fcntl.h>
|
/** Entrance function to the program
|
* @param argv is a number of parameters used in program call (including the program name
|
* @param argc is a pointer to strings (character arrays) which holds the arguments
|
* @returns returns 0 on success, any other number on fail.
|
*/
|
|
int main(int argv, char *argc[]){
|
ts_vesicle *vesicle;
|
ts_tape *tape;
|
ts_uint start_iteration=0;
|
force_from_tape=0;
|
/* create lock file */
|
createPidFile("ts_trisurf",".lock",0);
|
parse_args(argv,argc); // sets global variable command_line_args (defined in io.h)
|
ts_fprintf(stdout,"TRISURF-NG v. %s, compiled on: %s %s.\n", TS_VERSION, __DATE__, __TIME__);
|
ts_fprintf(stdout,"Programming done by: Samo Penic and Miha Fosnaric\n");
|
ts_fprintf(stdout,"Released under terms of GPLv3\n");
|
ts_fprintf(stdout,"Starting program...\n\n");
|
// vesicle = parseDump("timestep_000000.vtu");
|
// run_simulation(vesicle, vesicle->tape->mcsweeps, vesicle->tape->inititer, vesicle->tape->iterations, 1);
|
|
if(command_line_args.dump_from_vtk[0]!=0){
|
ts_fprintf(stdout,"************************************************\n");
|
ts_fprintf(stdout,"***** Dumping vesicle from VTK points list *****\n");
|
ts_fprintf(stdout,"************************************************\n\n");
|
vesicle = parseDump(command_line_args.dump_from_vtk);
|
tape = vesicle->tape;
|
// tape=parsetape(command_line_args.tape_fullfilename);
|
// vesicle=vtk2vesicle(command_line_args.dump_from_vtk,tape);
|
}
|
else if(command_line_args.force_from_tape){
|
ts_fprintf(stdout,"************************************************\n");
|
ts_fprintf(stdout,"**** Generating initial geometry from tape *****\n");
|
ts_fprintf(stdout,"************************************************\n\n");
|
tape=parsetape(command_line_args.tape_fullfilename);
|
vesicle=create_vesicle_from_tape(tape);
|
} else {
|
|
ts_fprintf(stdout,"**********************************************************************\n");
|
ts_fprintf(stdout,"**** Recreating vesicle from dump file and continuing simulation *****\n");
|
ts_fprintf(stdout,"**********************************************************************\n\n");
|
tape=parsetape(command_line_args.tape_fullfilename);
|
vesicle=restore_state(&start_iteration);
|
if(vesicle==NULL){
|
ts_fprintf(stderr, "Dump file does not exist or is not a regular file! Did you mean to invoke trisurf with --force-from-tape option?\n\n");
|
return 1;
|
}
|
// nove vrednosti iz tapea...
|
vesicle->bending_rigidity=tape->xk0;
|
vtx_set_global_values(vesicle);
|
vesicle->pswitch =tape->pswitch;
|
vesicle->pressure=tape->pressure;
|
vesicle->dmax=tape->dmax*tape->dmax;
|
poly_assign_filament_xi(vesicle,tape);
|
free(vesicle->tape);
|
vesicle->tape=tape;
|
vesicle->clist->dmin_interspecies = tape->dmin_interspecies*tape->dmin_interspecies;
|
|
|
|
/* spherical harmonics */
|
if(tape->shc>0){
|
vesicle->sphHarmonics=complex_sph_init(vesicle->vlist,tape->shc);
|
}
|
else {
|
vesicle->sphHarmonics=NULL;
|
}
|
|
if(command_line_args.reset_iteration_count) start_iteration=tape->inititer;
|
else start_iteration++;
|
|
if(start_iteration>=tape->iterations){
|
ts_fprintf(stdout, "Simulation already completed. if you want to rerun it try with --force-from-tape or --reset-iteration-count\n\n");
|
return 0;
|
}
|
|
/* if requested in tape, we can have smaller number of polymeres attached to membrane than the number of polymeres in dump file */
|
if(vesicle->tape->npoly != vesicle->poly_list->n){
|
|
ts_fprintf(stdout,"(INFO) the number of polymeres attached to membrane in tape is different than a number of polymeres in dump file!\n");
|
if(vesicle->tape->npoly > vesicle->poly_list->n){
|
ts_fprintf(stdout,"(INFO) It is possible to decrease the number of polymeres on the membrane, but it is not allowed to increase its number. The maximal allowed number in tape is %d The execution of program will terminate!\n",vesicle->poly_list->n);
|
fatal("Terminating due to increase of number of polymeres",1);
|
} else {
|
remove_random_polymeres(vesicle->poly_list, vesicle->poly_list->n - vesicle->tape->npoly);
|
ts_fprintf(stdout,"(INFO)\n(INFO) The new number of polymeres from tape is %d.\n\n",vesicle->poly_list->n);
|
|
}
|
}
|
}
|
|
run_simulation(vesicle, tape->mcsweeps, tape->inititer, tape->iterations, start_iteration);
|
write_master_xml_file(command_line_args.output_fullfilename);
|
write_dout_fcompat_file(vesicle,"dout");
|
vesicle_free(vesicle);
|
tape_free(tape);
|
return 0; //program finished perfectly ok. We return 0.
|
}
|
