trisurf-ng.git - Gitblit

Samo Penic

2012-02-23 e016c401c98b6a33392b551b2c40fccded21efe3

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d7639a	1	#include<stdlib.h>
SP	2	#include "general.h"
	3	#include "vertex.h"
bb77ca	4
SP	5	ts_cell_list *init_cell_list(ts_uint ncmax1, ts_uint ncmax2, ts_uint ncmax3, ts_double stepsize){
d7639a	6	ts_uint i;
bb77ca	7	ts_uint nocells=ncmax1ncmax2ncmax3;
SP	8	ts_cell_list clist=(ts_cell_list )malloc(sizeof(ts_cell_list));
	9	if(clist==NULL) fatal("Error while allocating memory for cell list!",100);
	10
	11	clist->ncmax[0]=ncmax1;
	12	clist->ncmax[1]=ncmax2;
	13	clist->ncmax[2]=ncmax3;
	14	clist->cellno=nocells;
d7639a	15	clist->dcell=1.0/(1.0 + stepsize);
SP	16	clist->shift=(ts_double) clist->ncmax[0]/2;
bb77ca	17
SP	18	clist->cell=(ts_cell *)malloc(nocellssizeof(ts_cell *));
	19	if(clist->cell==NULL) fatal("Error while allocating memory for cell list! ncmax too large?",101);
	20
d7639a	21	for(i=0;i<nocells;i++){
bb77ca	22	clist->cell[i]=(ts_cell *)malloc(sizeof(ts_cell));
SP	23	if(clist->cell[i]==NULL) fatal("Error while allocating memory for cell list! ncmax too large?",102);
	24	clist->cell[i]->idx=i+1; // We enumerate cells! Probably never required!
	25	clist->cell[i]->data=(ts_cell_data *)calloc(1,sizeof(ts_cell_data));
d7639a	26	}
bb77ca	27	return clist;
SP	28	}
	29
	30	ts_bool cell_free(ts_cell* cell){
	31	if(cell->data!=NULL){
	32	if(cell->data->vertex!=NULL) free(cell->data->vertex);
	33	free(cell->data);
	34	}
	35	free(cell);
d7639a	36	return TS_SUCCESS;
SP	37	}
	38
	39	ts_bool cell_list_free(ts_cell_list *clist){
	40	ts_uint i;
bb77ca	41	if(clist==NULL) return TS_FAIL;
SP	42	ts_uint nocells=clist->cellno;
d7639a	43	for(i=0;i<nocells;i++)
bb77ca	44	if(clist->cell[i] != NULL) cell_free(clist->cell[i]);
d7639a	45	free(clist->cell);
bb77ca	46	free(clist);
d7639a	47	return TS_SUCCESS;
SP	48	}
	49
	50
bb77ca	51	//TODO: not debugged at all!
SP	52	inline ts_uint vertex_self_avoidance(ts_vesicle vesicle, ts_vertex vtx){
	53	ts_uint cellidx;
	54	ts_uint ncx, ncy,ncz;
	55	ts_cell_list *clist=vesicle->clist;
	56	ncx=(ts_uint)((vtx->data->x-vesicle->cm[0])*clist->dcell+clist->shift);
	57	ncy=(ts_uint)((vtx->data->y-vesicle->cm[1])*clist->dcell+clist->shift);
	58	ncz=(ts_uint)((vtx->data->z-vesicle->cm[2])*clist->dcell+clist->shift);
	59
	60	if(ncx == clist->ncmax[0]-1 \|\| ncx == 2){
d7639a	61	fatal("Vesicle is positioned outside the cell covered area. Coordinate x is the problem.",1500);
SP	62	}
bb77ca	63	if(ncy == clist->ncmax[1]-1 \|\| ncy == 2){
d7639a	64	fatal("Vesicle is positioned outside the cell covered area. Coordinate y is the problem.",1500);
SP	65	}
bb77ca	66	if(ncz == clist->ncmax[2]-1 \|\| ncz == 2){
d7639a	67	fatal("Vesicle is positioned outside the cell covered area. Coordinate z is the problem.",1500);
SP	68	}
bb77ca	69	cellidx=ncz+(ncy-1)clist->ncmax[2] + (ncx-1)clist->ncmax[2]*
SP	70	clist->ncmax[1] - 1; // -1 is because of 0 based indexing
	71	return cellidx;
d7639a	72	}
SP	73
	74
bb77ca	75	//TODO: looks ok, but debug anyway in the future
d7639a	76	ts_bool cell_add_vertex(ts_cell cell, ts_vertex vtx){
bb77ca	77	cell->data->nvertex++;
SP	78	cell->data->vertex=(ts_vertex *)realloc(cell->data->vertex,cell->data->nvertexsizeof(ts_vertex *));
dac2e5	79	if(cell->data->vertex == NULL){
b01cc1	80	fatal("Reallocation of memory failed during insertion of vertex in cell_add_vertex",3);
d7639a	81	}
bb77ca	82	cell->data->vertex[cell->data->nvertex-1]=vtx;
d7639a	83	return TS_SUCCESS;
SP	84	}
	85
bb77ca	86
SP	87	ts_bool cell_list_cell_occupation_clear(ts_cell_list *clist){
d7639a	88	ts_uint i;
SP	89	for(i=0;i<clist->cellno;i++){
bb77ca	90	if(clist->cell[i]->data->vertex != NULL){
SP	91	free(clist->cell[i]->data->vertex);
	92	clist->cell[i]->data->vertex=NULL;
d7639a	93	}
bb77ca	94	clist->cell[i]->data->nvertex=0;
d7639a	95	}
SP	96	return TS_SUCCESS;
	97	}
	98
bb77ca	99	// TODO: compiles ok, but it is completely untested and undebugged. It was debugged before rewrite, but this was long time ago.
d7639a	100	ts_bool cell_occupation_number_and_internal_proximity(ts_cell_list clist, ts_uint cellidx, ts_vertex vtx, ts_vertex *tvtx){
SP	101	ts_uint ncx,ncy,ncz,remainder,cell_occupation;
bb77ca	102	ts_uint i,j,k,l,neigh_cidx;
d7639a	103	ts_double dist;
bb77ca	104	ncx=(cellidx+1)/(clist->ncmax[2]*clist->ncmax[1])+1; //+1 because of zero indexing.
d7639a	105	remainder=(cellidx+1)%(clist->ncmax[2]*clist->ncmax[1]);
SP	106	ncy=remainder/clist->ncmax[2]+1;
	107	ncz=remainder%clist->ncmax[2];
	108	// fprintf(stderr,"here are ncx,ncy,ncz=%i,%i,%i\n",ncx,ncy,ncz);
	109
	110	for(i=ncx-1;i<=ncx+1;i++){
	111	for(j=ncy-1;j<=ncy+1;j++){
	112	for(k=ncz-1;k<=ncz+1;k++){
	113	neigh_cidx=k+(j-1)clist->ncmax[2]+(i-1)clist->ncmax[2]*clist->ncmax[1] -1;
	114	// fprintf(stderr,"neigh_cell_index=%i\n",neigh_cidx);
bb77ca	115	cell_occupation=clist->cell[neigh_cidx]->data->nvertex;
d7639a	116	// fprintf(stderr, "cell_occupation=%i\n",cell_occupation);
SP	117	if(cell_occupation>clist->max_occupancy){
	118	fatal("Neighbouring cell occupation more than set max_occupancy value.",2000);
	119	}
	120	// Now we check whether we didn't come close to some other vertices in the same
	121	// cell!
	122	if(cell_occupation>1){
	123	for(l=0;l<cell_occupation;l++){
bb77ca	124	if(clist->cell[neigh_cidx]->data->vertex[l]!=vtx){
d7639a	125	// fprintf(stderr,"calling dist on vertex %i\n",l);
bb77ca	126	dist=vtx_distance_sq(clist->cell[neigh_cidx]->data->vertex[l],tvtx);
d7639a	127	// fprintf(stderr,"dist was %f\n",dist);
SP	128	if(dist<1) return TS_FAIL;
	129	}
	130	}
	131	}
	132	}
	133	}
	134	}
	135
	136	return TS_SUCCESS;
	137	}