| commit | author | age | ||
| 7f6076 | 1 | /* vim: set ts=4 sts=4 sw=4 noet : */ |
| d7639a | 2 | #include<stdlib.h> |
| SP | 3 | #include "general.h" |
| 4 | #include "vertex.h" | |
| bb77ca | 5 | |
| SP | 6 | ts_cell_list *init_cell_list(ts_uint ncmax1, ts_uint ncmax2, ts_uint ncmax3, ts_double stepsize){ |
| d7639a | 7 | ts_uint i; |
| bb77ca | 8 | ts_uint nocells=ncmax1*ncmax2*ncmax3; |
| SP | 9 | ts_cell_list *clist=(ts_cell_list *)malloc(sizeof(ts_cell_list)); |
| 10 | if(clist==NULL) fatal("Error while allocating memory for cell list!",100); | |
| 11 | ||
| 12 | clist->ncmax[0]=ncmax1; | |
| 13 | clist->ncmax[1]=ncmax2; | |
| 14 | clist->ncmax[2]=ncmax3; | |
| 15 | clist->cellno=nocells; | |
| d7639a | 16 | clist->dcell=1.0/(1.0 + stepsize); |
| SP | 17 | clist->shift=(ts_double) clist->ncmax[0]/2; |
| bb77ca | 18 | |
| SP | 19 | clist->cell=(ts_cell **)malloc(nocells*sizeof(ts_cell *)); |
| 20 | if(clist->cell==NULL) fatal("Error while allocating memory for cell list! ncmax too large?",101); | |
| 21 | ||
| d7639a | 22 | for(i=0;i<nocells;i++){ |
| 34d3de | 23 | clist->cell[i]=(ts_cell *)calloc(1,sizeof(ts_cell)); |
| bb77ca | 24 | if(clist->cell[i]==NULL) fatal("Error while allocating memory for cell list! ncmax too large?",102); |
| SP | 25 | clist->cell[i]->idx=i+1; // We enumerate cells! Probably never required! |
| d7639a | 26 | } |
| bb77ca | 27 | return clist; |
| SP | 28 | } |
| 29 | ||
| 30 | ts_bool cell_free(ts_cell* cell){ | |
| 34d3de | 31 | if(cell->vertex!=NULL) free(cell->vertex); |
| bb77ca | 32 | free(cell); |
| d7639a | 33 | return TS_SUCCESS; |
| SP | 34 | } |
| 35 | ||
| 36 | ts_bool cell_list_free(ts_cell_list *clist){ | |
| 37 | ts_uint i; | |
| bb77ca | 38 | if(clist==NULL) return TS_FAIL; |
| SP | 39 | ts_uint nocells=clist->cellno; |
| d7639a | 40 | for(i=0;i<nocells;i++) |
| bb77ca | 41 | if(clist->cell[i] != NULL) cell_free(clist->cell[i]); |
| d7639a | 42 | free(clist->cell); |
| bb77ca | 43 | free(clist); |
| d7639a | 44 | return TS_SUCCESS; |
| SP | 45 | } |
| 46 | ||
| 47 | ||
| bb77ca | 48 | inline ts_uint vertex_self_avoidance(ts_vesicle *vesicle, ts_vertex *vtx){ |
| SP | 49 | ts_uint cellidx; |
| 50 | ts_uint ncx, ncy,ncz; | |
| 51 | ts_cell_list *clist=vesicle->clist; | |
| 8f6a69 | 52 | ncx=(ts_uint)((vtx->x-vesicle->cm[0])*clist->dcell+clist->shift); |
| SP | 53 | ncy=(ts_uint)((vtx->y-vesicle->cm[1])*clist->dcell+clist->shift); |
| 54 | ncz=(ts_uint)((vtx->z-vesicle->cm[2])*clist->dcell+clist->shift); | |
| bb77ca | 55 | |
| a63f17 | 56 | if(ncx >= clist->ncmax[0]-1 || ncx <= 2){ |
| d7639a | 57 | fatal("Vesicle is positioned outside the cell covered area. Coordinate x is the problem.",1500); |
| SP | 58 | } |
| a63f17 | 59 | if(ncy >= clist->ncmax[1]-1 || ncy <= 2){ |
| d7639a | 60 | fatal("Vesicle is positioned outside the cell covered area. Coordinate y is the problem.",1500); |
| SP | 61 | } |
| a63f17 | 62 | if(ncz >= clist->ncmax[2]-1 || ncz <= 2){ |
| d7639a | 63 | fatal("Vesicle is positioned outside the cell covered area. Coordinate z is the problem.",1500); |
| SP | 64 | } |
| bb77ca | 65 | cellidx=ncz+(ncy-1)*clist->ncmax[2] + (ncx-1)*clist->ncmax[2]* |
| SP | 66 | clist->ncmax[1] - 1; // -1 is because of 0 based indexing |
| 67 | return cellidx; | |
| d7639a | 68 | } |
| SP | 69 | |
| 70 | ||
| a63f17 | 71 | inline ts_bool cell_add_vertex(ts_cell *cell, ts_vertex *vtx){ |
| SP | 72 | ts_uint i; |
| 73 | for(i=0;i<cell->nvertex;i++){ | |
| 74 | if(cell->vertex[i]==vtx){ | |
| 75 | //vertex is already in the cell! | |
| 76 | //fprintf(stderr,"VTX in the cell!\n"); | |
| 77 | return TS_FAIL; | |
| 78 | } | |
| 79 | } | |
| 80 | //fprintf(stderr,"VTX added to the cell!\n"); | |
| 34d3de | 81 | cell->nvertex++; |
| SP | 82 | cell->vertex=(ts_vertex **)realloc(cell->vertex,cell->nvertex*sizeof(ts_vertex *)); |
| 83 | if(cell->vertex == NULL){ | |
| b01cc1 | 84 | fatal("Reallocation of memory failed during insertion of vertex in cell_add_vertex",3); |
| d7639a | 85 | } |
| 34d3de | 86 | cell->vertex[cell->nvertex-1]=vtx; |
| a63f17 | 87 | vtx->cell=cell; |
| d7639a | 88 | return TS_SUCCESS; |
| SP | 89 | } |
| 90 | ||
| a63f17 | 91 | inline ts_bool cell_remove_vertex(ts_cell *cell, ts_vertex *vtx){ |
| SP | 92 | ts_uint i,j=0; |
| 93 | for(i=0;i<cell->nvertex;i++){ | |
| 94 | if(cell->vertex[i]!=vtx){ | |
| 95 | cell->vertex[j]=cell->vertex[i]; | |
| 96 | j++; | |
| 97 | } | |
| 98 | } | |
| 99 | if(j==i){ | |
| 100 | fatal("Vertex was not in the cell!",3); | |
| 101 | } | |
| 102 | //fprintf(stderr, "Vertex deleted from the cell!\n"); | |
| 103 | ||
| 104 | /* resize memory. potentionally time consuming */ | |
| 105 | cell->nvertex--; | |
| 106 | cell->vertex=(ts_vertex **)realloc(cell->vertex,cell->nvertex*sizeof(ts_vertex *)); | |
| 107 | if(vtx->neigh == NULL && vtx->neigh_no!=0) | |
| 108 | if(cell->vertex == NULL){ | |
| 109 | fatal("Reallocation of memory failed during removal of vertex in cell_remove_vertex",3); | |
| 110 | } | |
| 111 | return TS_SUCCESS; | |
| 112 | } | |
| bb77ca | 113 | |
| SP | 114 | ts_bool cell_list_cell_occupation_clear(ts_cell_list *clist){ |
| d7639a | 115 | ts_uint i; |
| SP | 116 | for(i=0;i<clist->cellno;i++){ |
| 34d3de | 117 | if(clist->cell[i]->vertex != NULL){ |
| SP | 118 | free(clist->cell[i]->vertex); |
| 119 | clist->cell[i]->vertex=NULL; | |
| d7639a | 120 | } |
| 34d3de | 121 | clist->cell[i]->nvertex=0; |
| d7639a | 122 | } |
| SP | 123 | return TS_SUCCESS; |
| 124 | } | |
| 125 | ||
| ea1cce | 126 | |
| a63f17 | 127 | ts_bool cell_occupation_number_and_internal_proximity(ts_cell_list *clist, ts_uint cellidx, ts_vertex *vtx){ |
| d7639a | 128 | ts_uint ncx,ncy,ncz,remainder,cell_occupation; |
| bb77ca | 129 | ts_uint i,j,k,l,neigh_cidx; |
| d7639a | 130 | ts_double dist; |
| bb77ca | 131 | ncx=(cellidx+1)/(clist->ncmax[2]*clist->ncmax[1])+1; //+1 because of zero indexing. |
| d7639a | 132 | remainder=(cellidx+1)%(clist->ncmax[2]*clist->ncmax[1]); |
| SP | 133 | ncy=remainder/clist->ncmax[2]+1; |
| 134 | ncz=remainder%clist->ncmax[2]; | |
| 135 | // fprintf(stderr,"here are ncx,ncy,ncz=%i,%i,%i\n",ncx,ncy,ncz); | |
| 136 | ||
| 137 | for(i=ncx-1;i<=ncx+1;i++){ | |
| 138 | for(j=ncy-1;j<=ncy+1;j++){ | |
| 139 | for(k=ncz-1;k<=ncz+1;k++){ | |
| 140 | neigh_cidx=k+(j-1)*clist->ncmax[2]+(i-1)*clist->ncmax[2]*clist->ncmax[1] -1; | |
| 141 | // fprintf(stderr,"neigh_cell_index=%i\n",neigh_cidx); | |
| 34d3de | 142 | cell_occupation=clist->cell[neigh_cidx]->nvertex; |
| d7639a | 143 | // fprintf(stderr, "cell_occupation=%i\n",cell_occupation); |
| SP | 144 | if(cell_occupation>clist->max_occupancy){ |
| 42190f | 145 | ts_fprintf(stderr,"max occupancy= %d, cell occupation= %d", clist->max_occupancy, cell_occupation); |
| d7639a | 146 | fatal("Neighbouring cell occupation more than set max_occupancy value.",2000); |
| SP | 147 | } |
| 148 | // Now we check whether we didn't come close to some other vertices in the same | |
| 149 | // cell! | |
| a18ed8 | 150 | if(cell_occupation>0){ |
| d7639a | 151 | for(l=0;l<cell_occupation;l++){ |
| a63f17 | 152 | |
| SP | 153 | //carefull with this checks! |
| 555fd8 | 154 | if(clist->cell[neigh_cidx]->vertex[l]!=vtx){ |
| d7639a | 155 | // fprintf(stderr,"calling dist on vertex %i\n",l); |
| a63f17 | 156 | dist=vtx_distance_sq(clist->cell[neigh_cidx]->vertex[l],vtx); |
| 555fd8 | 157 | |
| M | 158 | // if(vtx->idx==1) |
| 159 | // fprintf(stderr,"VTX(0) ima bliznji vertex z indeksom, %d, tipa %d \n", clist->cell[neigh_cidx]->vertex[l]->idx, clist->cell[neigh_cidx]->vertex[l]->id); | |
| 160 | // if(vtx->idx==0 && clist->cell[neigh_cidx]->vertex[l]->idx==0) | |
| 161 | // fprintf(stderr,"*** dist was %f\n",dist); | |
| 162 | ||
| ea1cce | 163 | if(dist<=1.0 || (dist<=clist->dmin_interspecies && (clist->cell[neigh_cidx]->vertex[l]->id != vtx->id))) return TS_FAIL; |
| d7639a | 164 | } |
| SP | 165 | } |
| 166 | } | |
| 167 | } | |
| 168 | } | |
| a63f17 | 169 | } |
| d7639a | 170 | return TS_SUCCESS; |
| SP | 171 | } |
