| commit | author | age | ||
| a6b1b5 | 1 | ####### Vesicle definitions ########### |
| SP | 2 | # nshell is a number of divisions of dipyramid |
| 4a1b27 | 3 | nshell=17 |
| e86357 | 4 | # dmax is the max. bond length (in units l_min) |
| 304510 | 5 | dmax=1.7 |
| e86357 | 6 | # bending rigidity of the membrane (in units kT) |
| 2dcc65 | 7 | xk0=10.0 |
| e86357 | 8 | # max step size (in units l_min) |
| a6b1b5 | 9 | stepsize=0.15 |
| e86357 | 10 | |
| M | 11 | # Pressure calculations |
| 12 | # (pswitch=1: calc. p*dV energy contribution) | |
| 414b8a | 13 | pswitch = 0 |
| 2dcc65 | 14 | # pressure difference: p_inside - p_outside (in units kT/l_min^3): |
| e86357 | 15 | pressure=0.0 |
| a6b1b5 | 16 | |
| 624f81 | 17 | ####### Polymer (brush) definitions ########### |
| a2db52 | 18 | # npoly is a number of polymers attached to npoly distinct vertices on vesicle |
| 152052 | 19 | npoly=0 |
| 48bb92 | 20 | # nmono is a number of monomers in each polymer |
| f8e6ba | 21 | nmono=10 |
| 48bb92 | 22 | # Spring constant between monomers of the polymer |
| M | 23 | k_spring=800 |
| a6b1b5 | 24 | |
| 624f81 | 25 | ####### Filament (inside the vesicle) definitions ########### |
| 58230a | 26 | # nfil is a number of filaments inside the vesicle |
| M | 27 | nfil=1 |
| 28 | # nfono is a number of monomers in each filament | |
| 29 | nfono=300 | |
| b30f45 | 30 | # Persistence lenght of the filaments (in units l_min) |
| M | 31 | xi=10 |
| 58230a | 32 | |
| M | 33 | ####### Nucleus (inside the vesicle) ########### |
| 34 | # Radius of an impenetrable hard sphere inside the vesicle | |
| 35 | R_nucleus=5 | |
| 624f81 | 36 | |
| a6b1b5 | 37 | ####### Cell definitions ############ |
| SP | 38 | nxmax=60 |
| 39 | nymax=60 | |
| 40 | nzmax=60 | |
| 41 | ||
| 42 | ||
| 43 | ####### Program Control ############ | |
| d7a113 | 44 | #how many MC sweeps between subsequent records of states to disk |
| 58230a | 45 | mcsweeps=300 |
| d7a113 | 46 | #how many initial mcsweeps*inititer MC sweeps before recording to disk? |
| 58230a | 47 | inititer=0 |
| d7a113 | 48 | #how many records do you want on the disk iteration are there in a run? |
| 58230a | 49 | iterations=300 |
| d7a113 | 50 | |
| a6b1b5 | 51 | |
| SP | 52 | #shut up if we are using cluster!!! |
| 53 | quiet=false | |
| f74313 | 54 | |
| SP | 55 | #what type of multiprocessing? (*none, smp, cluster, distributed, cuda, auto) |
| 56 | #currently only none makes sense. | |
| 57 | multiprocessing=none | |
| 58 | #how many cores are allowed to process in SMP? | |
| 59 | smp_cores=2 | |
| 60 | #how many nodes in cluster? | |
| 61 | cluster_nodes=50 | |
| 62 | #max number of processes in distributed (voluntary) environment | |
| 63 | distributed_processes=50 | |
| 64 | #cuda options??? | |
