| commit | author | age | ||
| 22a18c | 1 | /* vim: set ts=4 sts=4 sw=4 noet : */ |
| SP | 2 | #include<stdio.h> |
| 3 | #include<math.h> | |
| 4 | #include<stdlib.h> | |
| 5 | #include "general.h" | |
| 6 | //#include "vertex.h" | |
| 7 | //#include "bond.h" | |
| 8 | //#include "triangle.h" | |
| 9 | //#include "cell.h" | |
| 10 | #include "vesicle.h" | |
| 11 | #include "io.h" | |
| 12 | //#include "initial_distribution.h" | |
| 13 | //#include "frame.h" | |
| 14 | //#include "timestep.h" | |
| 15 | //#include "poly.h" | |
| 16 | #include "stats.h" | |
| 17 | #include "sh.h" | |
| 18 | #include "shcomplex.h" | |
| 19 | #include "dumpstate.h" | |
| 20 | #include "restore.h" | |
| 8c91d2 | 21 | #include "cluster.h" |
| 22a18c | 22 | #include <string.h> |
| SP | 23 | #include <getopt.h> |
| 24 | #include <sys/stat.h> | |
| 25 | #include <sys/types.h> | |
| 26 | #include <dirent.h> | |
| 27 | #include <errno.h> | |
| 28 | #include <snapshot.h> | |
| 29 | #include<gsl/gsl_complex.h> | |
| 30 | #include<gsl/gsl_complex_math.h> | |
| 033407 | 31 | #include<stdio.h> |
| 06afc7 | 32 | #include "globals.h" |
| 22a18c | 33 | ts_vesicle *restoreVesicle(char *filename){ |
| SP | 34 | ts_vesicle *vesicle = parseDump(filename); |
| 35 | return vesicle; | |
| 36 | } | |
| 37 | ||
| 38 | void vesicle_calculate_ulm2(ts_vesicle *vesicle){ | |
| 39 | //complex_sph_free(vesicle->sphHarmonics); | |
| 40 | ||
| 41 | //vesicle->sphHarmonics=complex_sph_init(vesicle->vlist,21); | |
| 42 | vesicle_volume(vesicle); | |
| 43 | preparationSh(vesicle,getR0(vesicle)); | |
| 44 | calculateUlmComplex(vesicle); | |
| 45 | ts_int i,j; | |
| 46 | for(i=0;i<vesicle->sphHarmonics->l;i++){ | |
| 47 | for(j=i;j<2*i+1;j++){ | |
| 48 | printf("%e ", gsl_complex_abs2(vesicle->sphHarmonics->ulmComplex[i][j])); | |
| 49 | } | |
| 50 | } | |
| 51 | printf("\n"); | |
| 52 | ||
| 53 | } | |
| 54 | ||
| 89434d | 55 | |
| SP | 56 | |
| 57 | int count_bonds_with_energy(ts_bond_list *blist){ | |
| 58 | ||
| 59 | unsigned int i, cnt; | |
| 60 | cnt=0; | |
| 61 | for(i=0;i<blist->n;i++){ | |
| 62 | if(fabs(blist->bond[i]->energy)>1e-16) cnt++; | |
| 63 | } | |
| 64 | return cnt; | |
| 65 | } | |
| 033407 | 66 | |
| SP | 67 | |
| 68 | ||
| 69 | ts_bool write_histogram_data(ts_uint timestep_no, ts_vesicle *vesicle){ | |
| 70 | ts_cluster_list *cstlist=init_cluster_list(); | |
| 71 | clusterize_vesicle(vesicle,cstlist); | |
| 72 | //printf("No clusters=%d\n",cstlist->n); | |
| 0a2c81 | 73 | int k,i,cnt, test=0; |
| 033407 | 74 | int max_nvtx=0; |
| SP | 75 | char filename[255]; |
| 76 | sprintf(filename,"histogram_%.6u.csv",timestep_no); | |
| 77 | FILE *fd=fopen(filename,"w"); | |
| 78 | fprintf(fd,"Number_of_vertices_in cluster Number_of_clusters\n"); | |
| 79 | for(k=0;k<cstlist->n;k++) | |
| 80 | if(cstlist->cluster[k]->nvtx>max_nvtx) max_nvtx=cstlist->cluster[k]->nvtx; | |
| 81 | //printf("Max. number of vertices in cluster: %d\n",max_nvtx); | |
| 82 | for(i=1;i<=max_nvtx;i++){ | |
| 83 | cnt=0; | |
| 84 | for(k=0;k<cstlist->n;k++) | |
| 85 | if(cstlist->cluster[k]->nvtx==i) cnt++; | |
| 86 | fprintf(fd,"%d %d\n",i,cnt); | |
| 0a2c81 | 87 | test+=cnt*i; |
| 033407 | 88 | } |
| SP | 89 | //for(k=0;k<cstlist->n;k++){ |
| 90 | // printf("*Cluster %d has %d vertices\n",k,cstlist->cluster[k]->nvtx); | |
| 91 | // } | |
| 92 | ||
| 93 | fclose(fd); | |
| 0a2c81 | 94 | // printf("*Sum of all vertices in clusters: %d\n", test); |
| SP | 95 | // write_vertex_xml_file(vesicle,timestep_no,cstlist); |
| 033407 | 96 | cluster_list_free(cstlist); |
| SP | 97 | |
| 98 | return TS_SUCCESS; | |
| 99 | } | |
| 100 | ||
| 89434d | 101 | |
| 22a18c | 102 | int main(){ |
| SP | 103 | ts_vesicle *vesicle; |
| 104 | ts_char *i,*j; | |
| 105 | ts_uint tstep,n; | |
| 106 | ts_char *number; | |
| 107 | struct dirent **list; | |
| 810894 | 108 | ts_double l1,l2,l3,hbar; |
| 22a18c | 109 | int count; |
| SP | 110 | ts_fprintf(stderr,"TRISURF-NG v. %s, compiled on: %s %s.\n", TS_VERSION, __DATE__, __TIME__); |
| 111 | ||
| 810894 | 112 | fprintf(stdout, "OuterLoop Volume Area lamdba1 lambda2 lambda3 Nbw/Nb hbar\n"); |
| 22a18c | 113 | |
| SP | 114 | |
| 115 | count=scandir(".",&list,0,alphasort); | |
| 116 | if(count<0){ | |
| 117 | fatal("Error, cannot open directory.",1); | |
| 118 | } | |
| 119 | tstep=0; | |
| 120 | for(n=0;n<count;n++){ | |
| 121 | struct dirent *ent; | |
| 122 | ent=list[n]; | |
| 123 | i=rindex(ent->d_name,'.'); | |
| 124 | if(i==NULL) { | |
| 125 | continue; | |
| 126 | } | |
| 127 | if(strcmp(i+1,"vtu")==0){ | |
| 128 | j=rindex(ent->d_name,'_'); | |
| 129 | if(j==NULL) continue; | |
| 130 | number=strndup(j+1,j-i); | |
| 131 | quiet=1; | |
| 132 | ts_fprintf(stdout,"timestep: %u filename: %s\n",atoi(number),ent->d_name); | |
| 133 | // printf("%u ",atoi(number)); | |
| 134 | vesicle=restoreVesicle(ent->d_name); | |
| 135 | // vesicle_calculate_ulm2(vesicle); | |
| 136 | vesicle_volume(vesicle); | |
| 137 | vesicle_area(vesicle); | |
| 138 | gyration_eigen(vesicle,&l1,&l2,&l3); | |
| 810894 | 139 | hbar=vesicle_meancurvature(vesicle)/vesicle->area; |
| M | 140 | fprintf(stdout,"%d %.17e %.17e %.17e %.17e %.17e %.17e %.17e\n",atoi(number),vesicle->volume, vesicle->area,l1,l2,l3, (ts_double)count_bonds_with_energy(vesicle->blist)/(ts_double)vesicle->blist->n,hbar); |
| 22a18c | 141 | tstep++; |
| 033407 | 142 | write_histogram_data(atoi(number), vesicle); |
| 22a18c | 143 | free(number); |
| SP | 144 | tape_free(vesicle->tape); |
| 145 | vesicle_free(vesicle); | |
| 146 | } | |
| 147 | } | |
| 148 | for (n = 0; n < count; n++) | |
| 149 | { | |
| 150 | free(list[n]); | |
| 151 | } | |
| 152 | ||
| 153 | free(list); | |
| 154 | return 0; | |
| 155 | } | |
| 156 | ||
