commit | author | age
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/* vim: set ts=4 sts=4 sw=4 noet : */ |
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#include<stdio.h> |
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#include<math.h> |
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#include<stdlib.h> |
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#include "general.h" |
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//#include "vertex.h" |
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//#include "bond.h" |
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//#include "triangle.h" |
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//#include "cell.h" |
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#include "vesicle.h" |
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#include "io.h" |
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//#include "initial_distribution.h" |
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//#include "frame.h" |
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//#include "timestep.h" |
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//#include "poly.h" |
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#include "stats.h" |
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#include "sh.h" |
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#include "shcomplex.h" |
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#include "dumpstate.h" |
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#include "restore.h" |
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#include "cluster.h" |
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#include <string.h> |
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#include <getopt.h> |
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#include <sys/stat.h> |
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#include <sys/types.h> |
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#include <dirent.h> |
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#include <errno.h> |
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#include <snapshot.h> |
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#include<gsl/gsl_complex.h> |
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#include<gsl/gsl_complex_math.h> |
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ts_vesicle *restoreVesicle(char *filename){ |
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ts_vesicle *vesicle = parseDump(filename); |
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return vesicle; |
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} |
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void vesicle_calculate_ulm2(ts_vesicle *vesicle){ |
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//complex_sph_free(vesicle->sphHarmonics); |
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//vesicle->sphHarmonics=complex_sph_init(vesicle->vlist,21); |
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vesicle_volume(vesicle); |
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preparationSh(vesicle,getR0(vesicle)); |
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calculateUlmComplex(vesicle); |
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ts_int i,j; |
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for(i=0;i<vesicle->sphHarmonics->l;i++){ |
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for(j=i;j<2*i+1;j++){ |
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printf("%e ", gsl_complex_abs2(vesicle->sphHarmonics->ulmComplex[i][j])); |
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} |
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} |
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printf("\n"); |
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} |
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int count_bonds_with_energy(ts_bond_list *blist){ |
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unsigned int i, cnt; |
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cnt=0; |
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for(i=0;i<blist->n;i++){ |
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if(fabs(blist->bond[i]->energy)>1e-16) cnt++; |
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} |
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return cnt; |
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} |
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int main(){ |
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ts_vesicle *vesicle; |
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ts_char *i,*j; |
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ts_uint tstep,n; |
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ts_char *number; |
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struct dirent **list; |
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ts_double l1,l2,l3; |
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int count; |
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ts_fprintf(stderr,"TRISURF-NG v. %s, compiled on: %s %s.\n", TS_VERSION, __DATE__, __TIME__); |
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fprintf(stdout, "OuterLoop Volume Area lamdba1 lambda2 lambda3 Nbw/Nb\n"); |
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count=scandir(".",&list,0,alphasort); |
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if(count<0){ |
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fatal("Error, cannot open directory.",1); |
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} |
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tstep=0; |
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for(n=0;n<count;n++){ |
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struct dirent *ent; |
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ent=list[n]; |
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i=rindex(ent->d_name,'.'); |
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if(i==NULL) { |
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continue; |
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} |
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if(strcmp(i+1,"vtu")==0){ |
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j=rindex(ent->d_name,'_'); |
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if(j==NULL) continue; |
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number=strndup(j+1,j-i); |
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quiet=1; |
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ts_fprintf(stdout,"timestep: %u filename: %s\n",atoi(number),ent->d_name); |
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// printf("%u ",atoi(number)); |
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vesicle=restoreVesicle(ent->d_name); |
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// vesicle_calculate_ulm2(vesicle); |
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vesicle_volume(vesicle); |
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vesicle_area(vesicle); |
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gyration_eigen(vesicle,&l1,&l2,&l3); |
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fprintf(stdout,"%d %.17e %.17e %.17e %.17e %.17e %.17e\n",atoi(number),vesicle->volume, vesicle->area,l1,l2,l3, (ts_double)count_bonds_with_energy(vesicle->blist)/(ts_double)vesicle->blist->n), |
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tstep++; |
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ts_cluster_list *cstlist=init_cluster_list(); |
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clusterize_vesicle(vesicle,cstlist); |
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printf("No clusters=%d\n",cstlist->n); |
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cluster_list_free(cstlist); |
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free(number); |
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tape_free(vesicle->tape); |
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vesicle_free(vesicle); |
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} |
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} |
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for (n = 0; n < count; n++) |
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{ |
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free(list[n]); |
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} |
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free(list); |
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return 0; |
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} |
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